Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.3e-37 157.1 77 100.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 2.7e-17 91.7 79 55.7
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.1e-16 87.4 77 54.5
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 4.3e-15 84.3 59 66.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 4.3e-15 84.3 75 53.3
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 9.7e-15 83.2 69 58.0
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 9.7e-15 83.2 79 49.4
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.2e-14 82.0 75 56.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 2.8e-14 81.6 85 52.9
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 2.8e-14 81.6 67 55.2
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 3.7e-14 81.3 80 52.5
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 4.8e-14 80.9 47 72.3
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 8.2e-14 80.1 77 48.1
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.8e-13 79.0 46 71.7
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.8e-13 79.0 68 54.4
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 6.9e-13 77.0 71 52.1
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 9.1e-13 76.6 47 70.2
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.5e-12 75.9 74 50.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.5e-12 75.9 66 53.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.5e-12 75.9 66 53.0
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 2.6e-12 75.1 72 52.8
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 3.4e-12 74.7 73 50.7
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 4.5e-12 74.3 72 55.6
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 4.5e-12 74.3 72 50.0
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 5.9e-12 73.9 72 51.4
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 5.9e-12 73.9 72 51.4
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 5.9e-12 73.9 72 51.4
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 7.7e-12 73.6 68 52.9
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 7.7e-12 73.6 72 51.4
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 7.7e-12 73.6 77 53.2
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 7.7e-12 73.6 77 53.2
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 7.7e-12 73.6 76 47.4
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 3.8e-11 71.2 71 47.9
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 6.5e-11 70.5 68 52.9
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 6.5e-11 70.5 68 52.9
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.9e-10 68.9 78 50.0
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.5e-10 68.6 78 50.0
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-10 68.6 78 50.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.2e-10 67.8 70 42.9
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 4.2e-10 67.8 81 51.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 7.2e-10 67.0 55 56.4
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.2e-10 67.0 79 48.1
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.2e-10 67.0 79 48.1
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 9.4e-10 66.6 62 53.2
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.6e-09 65.9 48 52.1
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 2.7e-09 65.1 66 47.0
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.6e-09 64.7 70 41.4
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.6e-09 64.3 75 40.0
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 7.9e-09 63.5 61 49.2
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 7.9e-09 63.5 53 56.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.4e-08 62.8 70 41.4
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.8e-08 62.4 46 52.2
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.8e-08 62.4 53 50.9
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 2.3e-08 62.0 85 41.2
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 3.0e-08 61.6 67 43.3
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 3.0e-08 61.6 80 41.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-08 61.2 55 54.5
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 5.1e-08 60.8 77 44.2
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 6.7e-08 60.5 72 45.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 6.7e-08 60.5 72 45.8
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 6.7e-08 60.5 66 43.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 8.8e-08 60.1 70 41.4
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.5e-07 59.3 80 40.0
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.5e-07 59.3 65 38.5
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.0e-07 58.9 73 41.1
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 3.3e-07 58.2 70 45.7
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 3.3e-07 58.2 72 45.8
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 4.4e-07 57.8 70 41.4
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 4.4e-07 57.8 80 36.2
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 5.7e-07 57.4 68 48.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 7.4e-07 57.0 78 39.7
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 9.7e-07 56.6 49 55.1
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 9.7e-07 56.6 68 48.5
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.3e-06 56.2 72 40.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 2.2e-06 55.5 73 42.5
QL02p025882 Quercus lobata HOM05D013878 ORTHO05D007342 2.8e-06 55.1 82 41.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 3.7e-06 54.7 66 42.4
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.7e-06 54.7 44 54.5
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.8e-06 54.3 68 47.1
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 4.8e-06 54.3 79 36.7
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 6.3e-06 53.9 73 42.5
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 8.2e-06 53.5 68 44.1


User provided reference genes

Program Settings