Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 2228.0 1119 100.0
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1427.2 1116 65.9
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1382.9 1120 64.1
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1381.3 1123 64.0
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1379.0 1117 63.6
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1377.8 1100 63.5
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1373.6 1100 64.0
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1372.8 1102 64.4
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1370.9 1116 62.9
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1366.7 1114 63.2
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1364.4 1108 64.1
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1363.6 1102 63.6
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1355.9 1115 63.4
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1354.7 1119 63.2
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1354.0 1113 62.3
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1349.3 1105 63.1
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1347.8 1117 63.0
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1335.9 1116 63.0
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1332.0 1117 62.3
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1327.8 1164 60.0
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1322.4 1102 62.2
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1322.0 1092 62.7
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1320.4 1119 62.2
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1319.3 1114 61.8
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1319.3 1103 62.8
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1317.8 1080 62.5
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1314.3 1112 61.5
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1307.7 1112 61.4
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1305.8 1107 61.0
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1297.3 1119 62.3
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1295.8 1115 61.4
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1295.0 1104 61.1
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1294.6 1102 60.8
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 0.0e+00 1290.8 1099 62.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1288.5 1114 60.3
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1287.7 1101 60.5
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1286.9 1004 65.5
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1286.9 1105 61.2
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1282.3 1117 59.9
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1281.2 1109 60.1
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1281.2 1114 60.1
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1280.4 1113 59.3
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1279.6 1103 60.3
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1277.7 1113 60.6
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1276.9 1121 59.3
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1275.0 1114 60.0
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1274.2 1109 60.4
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1270.8 1114 60.0
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1270.4 1121 58.5
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1269.6 1101 60.6
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1269.6 1115 59.9
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1269.6 1121 59.4
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1268.8 1103 60.3
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1268.8 1114 60.2
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1268.4 1121 59.0
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1266.5 1113 60.0
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1264.6 1111 60.3
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1263.1 1123 59.2
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1261.9 1117 58.9
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1261.5 1125 59.0
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1260.0 1118 58.4
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1258.4 1117 59.4
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1251.9 1116 59.7
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1248.8 1112 58.9
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1246.5 1120 58.4
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1245.3 1099 59.9
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1241.5 1116 58.1
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1241.1 1116 58.5
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1239.6 1112 58.3
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1239.2 1115 58.7
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1239.2 1113 58.2
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1239.2 1117 58.2
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1238.8 1112 58.3
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1237.6 1116 60.1
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1237.6 1112 57.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1236.9 1114 59.9
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1236.5 1100 59.7
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1234.9 1114 57.8
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1234.2 1111 59.3
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1233.8 1108 58.1
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1233.4 1119 58.3
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1231.1 1123 58.4
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1228.8 1112 58.1
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1228.4 1100 59.4
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1227.6 1130 57.8
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1224.9 1113 57.7
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1215.3 1107 58.4
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1213.0 1107 58.3
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1211.8 1114 56.6
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1211.1 1134 56.9
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1208.7 1141 56.8
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1205.7 1107 57.7
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1203.0 1115 57.5
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1201.0 1111 59.0
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1192.2 1188 56.1
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1190.6 1092 57.8
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1189.1 1129 56.5
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1187.9 1121 56.1
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1186.8 1115 57.4
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1184.1 1107 57.5
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1178.3 1101 57.9
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1173.7 1108 57.7
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1102.8 1119 51.9
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1097.0 904 60.5
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1094.0 1038 56.6
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 0.0e+00 1092.4 1179 52.1
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 0.0e+00 1083.6 933 60.6
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 4.6e-307 1058.1 1191 49.0
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 6.0e-307 1057.7 1126 52.3
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 8.1e-304 1047.3 1114 50.8
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 6.6e-298 1027.7 1099 52.0
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.1e-260 904.0 789 60.3
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 2.5e-252 876.3 1018 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 2.8e-248 862.8 1082 44.7
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 1.4e-247 860.5 1217 41.8
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 8.5e-245 851.3 1072 45.6
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 9.1e-239 831.2 1254 39.3
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 6.4e-216 755.4 1128 41.9
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 2.7e-214 750.0 782 51.7
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.2e-208 730.3 545 66.6
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 1.5e-201 707.6 854 45.9
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 2.6e-193 680.2 898 44.5
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.9e-172 610.9 572 58.6
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 7.6e-169 599.0 608 54.6
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 7.1e-167 592.4 527 60.5
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 2.2e-160 570.9 1204 31.5
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 6.7e-149 532.7 1073 33.9
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 2.3e-133 481.1 1096 33.5
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.5e-132 478.4 1111 31.6
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 1.6e-129 468.4 740 41.8
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 1.6e-126 458.4 743 40.4
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 6.2e-86 323.6 199 79.9
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 6.2e-78 297.0 179 80.4
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 3.3e-71 274.6 227 60.8
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 3.8e-59 234.6 265 51.3
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 2.4e-53 215.3 137 79.6
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.0e-51 209.9 397 36.3
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 6.7e-48 197.2 173 62.4
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 1.4e-45 189.5 291 38.8
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 9.7e-39 166.8 255 42.0
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.9e-36 157.5 225 44.4
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 8.5e-35 153.7 278 37.8
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-34 152.9 302 37.4
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-34 152.9 161 52.2
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 8.8e-32 143.7 113 63.7
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.0e-27 130.2 170 47.1
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 3.8e-27 128.3 196 43.4
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 7.4e-23 114.0 130 49.2
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 2.2e-22 112.5 104 54.8
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 2.2e-22 112.5 132 45.5
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 8.5e-19 100.5 173 38.7
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 8.5e-19 100.5 152 37.5
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.2e-18 97.4 173 38.2
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.2e-18 97.4 173 38.2
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.6e-17 96.3 173 37.6
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 1.6e-17 96.3 137 43.8
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 4.0e-16 91.7 71 63.4
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.1e-15 90.1 163 36.8
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 9.7e-15 87.0 179 31.8
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 9.7e-15 87.0 77 53.2
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 9.7e-15 87.0 64 68.8
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 1.1e-13 83.6 97 45.4
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 5.3e-13 81.3 180 31.1
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 2.0e-12 79.3 50 70.0
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 2.0e-12 79.3 58 65.5
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 2.7e-12 79.0 53 71.7
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 3.5e-12 78.6 99 48.5
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 4.5e-12 78.2 52 71.2
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 1.5e-10 73.2 98 39.8
Gohir.A10G071633 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.9e-10 72.8 64 56.2
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 1.0e-08 67.0 77 41.6
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 1.4e-08 66.6 53 62.3
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 6.8e-08 64.3 61 52.5
PGSC0003DMG402019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 5.7e-07 61.2 73 50.7
AUR62015641 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.8e-06 58.9 63 44.4
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 4.8e-06 58.2 78 41.0


User provided reference genes

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