Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006310 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.1e-66 255.0 129 100.0
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 8.3e-19 97.4 115 46.1
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 3.2e-18 95.5 115 45.2
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 7.0e-18 94.4 115 44.3
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 2.0e-17 92.8 112 44.6
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 2.7e-17 92.4 115 43.5
Sc16g0006330 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.5e-17 92.0 88 56.8
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 4.6e-17 91.7 115 44.3
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 5.9e-17 91.3 115 43.5
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 7.8e-17 90.9 115 43.5
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 7.8e-17 90.9 118 40.7
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 1.0e-16 90.5 115 43.5
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 1.0e-16 90.5 115 43.5
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.7e-16 89.7 112 43.8
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 1.7e-16 89.7 115 43.5
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 3.0e-16 89.0 112 42.9
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 3.0e-16 89.0 117 41.0
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 3.0e-16 89.0 115 44.3
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 3.9e-16 88.6 115 43.5
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 3.9e-16 88.6 115 43.5
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 5.0e-16 88.2 117 42.7
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 5.0e-16 88.2 117 44.4
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 5.0e-16 88.2 115 42.6
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 5.0e-16 88.2 117 41.9
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 6.6e-16 87.8 116 43.1
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 8.6e-16 87.4 117 42.7
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 8.6e-16 87.4 115 42.6
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.5e-15 86.7 116 40.5
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.5e-15 86.7 117 41.9
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 1.5e-15 86.7 116 42.2
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.5e-15 85.9 117 41.0
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 2.5e-15 85.9 115 40.9
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 2.5e-15 85.9 115 40.9
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 3.3e-15 85.5 115 40.9
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 3.3e-15 85.5 117 40.2
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 3.3e-15 85.5 112 43.8
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 3.3e-15 85.5 115 40.0
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 3.3e-15 85.5 115 40.0
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 3.3e-15 85.5 115 42.6
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 3.3e-15 85.5 115 42.6
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.3e-15 85.1 117 41.9
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 4.3e-15 85.1 115 41.7
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 4.3e-15 85.1 115 41.7
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 4.3e-15 85.1 117 41.0
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 4.3e-15 85.1 117 42.7
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 5.6e-15 84.7 115 41.7
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 9.5e-15 84.0 117 40.2
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 9.5e-15 84.0 115 41.7
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 9.5e-15 84.0 115 38.3
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 9.5e-15 84.0 115 41.7
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.2e-14 83.6 117 39.3
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 1.2e-14 83.6 116 40.5
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 1.2e-14 83.6 130 40.8
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 1.2e-14 83.6 112 44.6
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 1.2e-14 83.6 115 40.0
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 1.2e-14 83.6 115 40.9
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 1.6e-14 83.2 115 40.0
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 1.6e-14 83.2 115 40.9
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 1.6e-14 83.2 134 36.6
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 2.1e-14 82.8 117 40.2
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.1e-14 82.8 117 39.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.1e-14 82.8 117 39.3
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 2.1e-14 82.8 126 38.1
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 2.1e-14 82.8 115 36.5
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 2.1e-14 82.8 115 40.0
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 2.8e-14 82.4 115 39.1
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 2.8e-14 82.4 115 40.9
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 3.6e-14 82.0 117 38.5
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 3.6e-14 82.0 117 39.3
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 3.6e-14 82.0 115 39.1
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.6e-14 82.0 115 40.0
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 4.7e-14 81.6 115 42.6
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 6.2e-14 81.3 117 41.0
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 6.2e-14 81.3 117 39.3
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 6.2e-14 81.3 115 38.3
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.0e-14 80.9 115 40.9
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 8.0e-14 80.9 115 40.9
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 8.0e-14 80.9 115 39.1
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 1.1e-13 80.5 112 39.3
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 1.1e-13 80.5 112 39.3
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 1.1e-13 80.5 115 40.0
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.1e-13 80.5 117 39.3
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 1.1e-13 80.5 117 39.3
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 1.4e-13 80.1 110 41.8
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.4e-13 80.1 115 40.0
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 1.4e-13 80.1 115 40.0
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.8e-13 79.7 115 36.5
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.8e-13 79.7 117 38.5
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.8e-13 79.7 117 40.2
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 2.3e-13 79.3 115 40.9
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 2.3e-13 79.3 112 42.9
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 3.1e-13 79.0 115 40.0
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 3.1e-13 79.0 117 36.8
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 4.0e-13 78.6 115 40.0
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 4.0e-13 78.6 115 39.1
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 4.0e-13 78.6 115 37.4
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 5.2e-13 78.2 112 40.2
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 5.2e-13 78.2 115 36.5
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 5.2e-13 78.2 115 37.4
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 6.8e-13 77.8 117 38.5
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 8.9e-13 77.4 112 39.3
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 8.9e-13 77.4 115 40.0
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 1.2e-12 77.0 115 39.1
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.2e-12 77.0 115 39.1
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.2e-12 77.0 115 39.1
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.5e-12 76.6 115 38.3
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 2.0e-12 76.3 115 39.1
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.0e-12 76.3 115 35.7
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 4.4e-12 75.1 115 36.5
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 4.4e-12 75.1 115 38.3
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 5.8e-12 74.7 115 38.3
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 1.3e-11 73.6 117 36.8
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 4.9e-11 71.6 115 38.3
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 6.4e-11 71.2 100 41.0
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 6.4e-11 71.2 115 39.1
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 1.1e-10 70.5 88 44.3
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.4e-10 70.1 112 39.3
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 1.9e-10 69.7 102 40.2
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.9e-10 69.7 113 37.2
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.9e-10 69.7 112 38.4
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 1.9e-10 69.7 112 39.3
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 1.9e-10 69.7 116 36.2
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 3.2e-10 68.9 112 37.5
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 4.1e-10 68.6 99 41.4
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 4.1e-10 68.6 115 37.4
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 4.1e-10 68.6 114 36.0
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 7.0e-10 67.8 88 42.0
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 4.6e-09 65.1 135 34.8
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 7.8e-09 64.3 103 35.9
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 7.8e-09 64.3 88 39.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 7.8e-09 64.3 118 36.4
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 1.3e-08 63.5 88 40.9
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 1.3e-08 63.5 88 40.9
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.3e-08 63.5 88 40.9
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.3e-08 63.5 88 42.0
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 3.9e-08 62.0 112 33.0
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 3.9e-08 62.0 95 37.9
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 5.0e-08 61.6 88 38.6
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 5.0e-08 61.6 75 44.0
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 5.0e-08 61.6 88 39.8
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.5e-07 60.1 83 44.6
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 1.9e-07 59.7 65 46.2
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 9.5e-07 57.4 74 39.2
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.2e-06 57.0 94 38.3
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 2.8e-06 55.8 75 41.3
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.6e-06 55.5 115 33.0
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 3.6e-06 55.5 65 41.5
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 4.7e-06 55.1 79 38.0
vmacro20371 Vaccinium macrocarpon HOM05D004956 ORTHO05D006284 8.1e-06 54.3 118 30.5


User provided reference genes

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