Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.4e-142 509.6 254 100.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.3e-129 465.7 251 90.0
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.1e-128 463.4 251 90.4
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.5e-128 463.0 249 90.4
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.9e-128 462.6 251 90.0
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.9e-128 462.6 251 90.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 3.3e-128 461.8 249 90.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 5.6e-128 461.1 251 88.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 9.6e-128 460.3 250 89.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 9.6e-128 460.3 250 89.6
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.3e-127 459.9 250 89.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.1e-127 459.1 250 90.4
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.8e-127 458.8 251 88.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 6.2e-127 457.6 250 89.6
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 6.2e-127 457.6 250 89.6
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 6.2e-127 457.6 251 88.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 6.2e-127 457.6 251 87.6
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.2e-127 457.6 251 87.6
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 8.1e-127 457.2 251 87.6
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.1e-126 456.8 250 89.2
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.8e-126 456.1 250 89.6
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.1e-126 455.3 251 87.3
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.1e-126 455.3 251 86.9
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 5.3e-126 454.5 251 87.6
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 6.9e-126 454.1 250 88.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 6.9e-126 454.1 249 88.8
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.2e-125 453.4 252 86.9
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.5e-125 453.0 250 87.2
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 3.4e-125 451.8 250 88.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 3.4e-125 451.8 251 87.6
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 4.5e-125 451.4 252 86.9
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.5e-125 451.4 250 86.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 7.6e-125 450.7 251 86.9
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 7.6e-125 450.7 250 86.8
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.9e-125 450.3 254 87.8
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 86.3
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 87.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 87.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 3.8e-124 448.4 250 87.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.8e-124 448.4 251 87.6
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.9e-124 448.0 251 86.9
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.9e-123 446.0 250 86.8
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.4e-123 445.7 258 84.5
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.4e-123 445.7 250 86.0
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 3.2e-123 445.3 250 86.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 4.2e-123 444.9 247 87.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 4.2e-123 444.9 250 85.2
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.5e-123 444.5 250 86.4
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 9.3e-123 443.7 249 86.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 9.3e-123 443.7 247 87.9
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 84.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.6e-122 443.0 247 88.7
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.7e-122 442.2 271 81.9
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.5e-122 441.8 244 88.9
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 3.5e-122 441.8 252 84.5
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 4.6e-122 441.4 247 88.3
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.9e-122 440.7 244 88.5
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 7.9e-122 440.7 244 88.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 7.9e-122 440.7 244 88.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.3e-121 439.9 250 84.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.8e-121 439.5 250 84.4
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.3e-121 439.1 251 85.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.5e-120 436.4 244 87.7
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.9e-120 436.0 243 87.2
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 4.3e-120 434.9 249 82.7
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.3e-119 433.3 296 76.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.8e-119 432.2 255 82.4
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 3.7e-119 431.8 250 81.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 3.7e-119 431.8 250 81.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 4.8e-119 431.4 250 82.4
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 4.8e-119 431.4 265 81.5
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 6.2e-119 431.0 244 86.5
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 82.4
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 82.4
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.1e-118 430.3 250 82.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.4e-118 429.9 250 82.0
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-118 429.9 250 81.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.1e-118 428.7 250 81.6
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 3.1e-118 428.7 233 90.6
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.1e-118 428.7 250 82.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 5.3e-118 427.9 250 86.4
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 6.9e-118 427.6 250 82.0
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 6.9e-118 427.6 250 82.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.6e-117 425.6 235 86.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.7e-116 422.9 250 81.6
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.7e-116 422.9 255 79.6
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.8e-116 421.8 297 70.7
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.9e-116 421.4 231 87.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.6e-114 414.8 251 80.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.9e-112 409.5 247 81.8
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 5.7e-112 407.9 250 80.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.4e-110 403.3 250 78.8
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.8e-110 402.9 244 76.6
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.4e-110 402.5 256 80.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.6e-109 399.1 355 60.3
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.1e-104 383.6 248 75.4
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.2e-103 379.4 242 72.7
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.8e-103 378.3 254 74.4
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.1e-102 377.1 212 85.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 5.3e-102 374.8 222 79.3
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.5e-101 373.2 254 76.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.2e-100 369.4 239 76.2
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.1e-98 362.8 250 73.6
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 3.7e-95 352.1 237 73.0
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.7e-92 343.2 252 66.7
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.8e-89 333.2 328 57.0
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-88 330.5 206 78.2
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-87 327.0 194 83.5
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 4.5e-85 318.5 182 83.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 3.8e-84 315.5 187 83.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 4.8e-79 298.5 212 71.2
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.8e-76 288.9 240 56.2
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 9.8e-72 274.2 151 88.1
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-70 268.9 184 70.1
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.1e-67 260.8 249 51.4
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 8.0e-66 254.6 211 66.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 5.2e-65 251.9 152 78.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.4e-62 243.8 198 63.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 4.7e-58 228.8 250 54.4
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.2e-55 219.9 123 87.8
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.0e-49 201.1 123 82.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.0e-48 196.8 99 94.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.2e-46 189.5 249 45.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 4.3e-43 179.1 100 82.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 4.7e-42 175.6 100 81.0
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.0e-40 170.2 253 35.6
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.7e-39 167.2 158 60.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-38 162.5 99 75.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 6.0e-37 158.7 99 77.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.3e-28 131.0 98 67.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.5e-19 100.9 72 65.3
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 3.3e-19 99.8 102 52.0
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 5.8e-16 89.0 137 44.5
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.2e-14 82.8 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 9.3e-14 81.6 44 79.5
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 2.3e-12 77.0 56 64.3
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.3e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 7.6e-08 62.0 55 63.6


User provided reference genes

Program Settings