Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 9.7e-53 209.9 109 100.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.4e-13 78.6 105 44.8
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.2e-12 75.9 105 44.8
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.7e-12 75.1 105 41.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.9e-12 74.7 105 41.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 8.3e-12 73.9 105 40.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-11 73.2 100 43.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.2e-11 72.0 100 44.0
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.1e-11 71.6 103 40.8
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 5.4e-11 71.2 103 39.8
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 7.0e-11 70.9 107 42.1
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.0e-10 69.3 107 40.2
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 2.0e-10 69.3 103 40.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.7e-10 68.9 100 41.0
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 6.0e-10 67.8 105 38.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.8e-10 67.4 105 40.0
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 7.8e-10 67.4 111 37.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.0e-09 67.0 105 38.1
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-09 66.6 102 36.3
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.3e-09 66.6 107 37.4
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.3e-09 66.6 106 36.8
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.7e-09 66.2 103 38.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.7e-09 66.2 103 38.8
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 2.3e-09 65.9 113 39.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.0e-09 65.5 113 38.1
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.9e-09 65.1 105 33.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.0e-09 64.7 105 37.1
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 5.0e-09 64.7 109 36.7
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.6e-09 64.3 107 35.5
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.6e-09 64.3 107 35.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 8.6e-09 63.9 100 38.0
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.6e-09 63.9 107 37.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.5e-08 63.2 105 36.2
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.5e-08 63.2 107 35.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.9e-08 62.8 103 38.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.9e-08 62.8 103 38.8
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.9e-08 62.8 106 37.7
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.9e-08 62.8 100 42.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.9e-08 62.8 105 37.1
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-08 62.4 100 42.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.3e-08 62.0 106 36.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.3e-08 61.6 106 35.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 5.6e-08 61.2 109 35.8
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 5.6e-08 61.2 110 37.3
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 9.5e-08 60.5 105 35.2
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.5e-08 60.5 108 36.1
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.5e-08 60.5 108 36.1
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 9.5e-08 60.5 109 36.7
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 1.6e-07 59.7 104 38.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.1e-07 59.3 105 35.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.8e-07 58.9 104 38.5
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.6e-07 58.5 105 35.2
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.6e-07 58.5 103 35.0
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 4.7e-07 58.2 106 34.9
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 4.7e-07 58.2 112 33.0
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.7e-07 58.2 101 33.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 4.7e-07 58.2 109 35.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.2e-07 57.8 103 35.0
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.0e-07 57.4 101 37.6
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.0e-07 57.4 106 35.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 8.0e-07 57.4 108 34.3
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.4e-06 56.6 105 34.3
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.8e-06 56.2 106 34.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.8e-06 56.2 107 34.6
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-06 55.8 106 34.0
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.3e-06 55.8 108 36.1
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.3e-06 55.8 105 30.5
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-06 55.8 101 33.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.1e-06 55.5 105 31.4
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.1e-06 55.5 108 34.3
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 5.2e-06 54.7 105 35.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.2e-06 54.7 99 38.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 5.2e-06 54.7 107 33.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.2e-06 54.7 105 36.2
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 6.8e-06 54.3 91 39.6
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 8.9e-06 53.9 88 39.8


User provided reference genes

Program Settings