Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 9.6e-99 363.6 199 100.0
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 9.1e-33 144.4 207 46.4
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 3.5e-32 142.5 199 47.7
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.5e-30 137.1 179 53.1
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 3.2e-30 136.0 208 43.8
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 2.1e-29 133.3 205 46.8
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 3.0e-28 129.4 207 44.0
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 2.6e-27 126.3 208 43.3
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 2.6e-27 126.3 208 45.2
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 4.4e-27 125.6 203 44.8
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 4.4e-27 125.6 206 43.2
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 9.8e-27 124.4 208 44.2
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 1.3e-26 124.0 208 45.7
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.3e-26 124.0 206 43.7
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 1.3e-26 124.0 208 44.7
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 4.9e-26 122.1 208 42.8
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 8.3e-26 121.3 205 43.9
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 1.8e-25 120.2 204 44.1
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.1e-25 119.0 207 42.5
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.1e-25 119.0 207 42.5
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 4.1e-25 119.0 208 41.8
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.6e-24 117.1 208 42.3
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.6e-24 117.1 208 40.9
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 2.0e-24 116.7 208 42.3
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.7e-24 116.3 208 42.8
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.7e-24 116.3 208 40.9
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 3.5e-24 115.9 208 42.3
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 3.5e-24 115.9 204 42.6
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 5.9e-24 115.2 209 41.6
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 5.9e-24 115.2 208 41.8
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.9e-24 115.2 208 41.8
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 7.8e-24 114.8 205 42.0
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 7.8e-24 114.8 208 43.8
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 1.3e-23 114.0 204 43.6
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 1.3e-23 114.0 208 44.2
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.8e-23 112.5 208 41.3
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.8e-23 112.5 207 38.6
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.1e-22 110.9 208 40.9
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 1.5e-22 110.5 208 42.3
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.5e-22 109.8 208 41.3
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.5e-22 109.8 208 40.9
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 4.3e-22 109.0 202 38.6
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 9.5e-22 107.8 205 41.0
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.6e-21 107.1 201 41.8
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.8e-21 106.3 205 39.0
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 3.6e-21 105.9 205 39.5
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 4.7e-21 105.5 206 38.3
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.0e-20 104.4 206 39.8
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.8e-20 103.6 207 43.0
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 2.3e-20 103.2 205 39.0
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 3.0e-20 102.8 209 40.7
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 4.0e-20 102.4 205 37.1
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 8.9e-20 101.3 204 37.7
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 1.2e-19 100.9 214 43.0
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.2e-19 100.9 207 42.0
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.5e-19 100.5 206 40.8
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.5e-19 100.5 204 38.7
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.0e-19 100.1 203 42.4
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 2.6e-19 99.8 209 39.7
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.4e-19 99.4 207 36.7
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 3.4e-19 99.4 211 40.3
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 4.4e-19 99.0 204 38.2
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 9.8e-19 97.8 205 40.0
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 9.8e-19 97.8 208 41.3
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 2.2e-18 96.7 198 35.4
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.9e-18 96.3 208 38.0
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.1e-17 94.4 206 38.3
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.1e-17 94.4 199 37.2
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 2.4e-17 93.2 206 37.9
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 3.2e-17 92.8 206 39.3
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 3.2e-17 92.8 207 37.2
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 4.1e-17 92.4 181 37.0
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 4.1e-17 92.4 207 37.2
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 5.4e-17 92.0 207 37.2
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 7.0e-17 91.7 206 36.4
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 7.0e-17 91.7 207 36.7
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 9.2e-17 91.3 207 36.7
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 1.2e-16 90.9 203 35.5
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.2e-16 90.9 204 36.8
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.2e-16 90.9 207 36.7
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.0e-16 90.1 205 37.1
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 7.8e-16 88.2 184 37.0
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 1.7e-15 87.0 203 38.9
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.3e-15 86.7 196 37.2
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 2.3e-15 86.7 204 37.7
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 5.0e-15 85.5 203 40.4
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 6.6e-15 85.1 203 35.0
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 1.1e-14 84.3 178 38.8
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 1.1e-14 84.3 201 38.3
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 4.3e-14 82.4 201 36.8
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.6e-13 80.5 203 35.5
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 4.7e-13 79.0 205 36.1
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 6.8e-12 75.1 207 34.3
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 6.8e-12 75.1 207 34.3
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 6.8e-12 75.1 207 34.3
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 6.8e-12 75.1 207 34.3
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 6.8e-12 75.1 204 33.3
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 8.9e-12 74.7 201 33.8
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 1.2e-11 74.3 200 34.5
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 3.4e-11 72.8 201 32.3
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 4.4e-11 72.4 210 34.3
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 7.5e-11 71.6 210 32.9
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 9.8e-11 71.2 203 33.0
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 9.8e-11 71.2 198 33.8
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 1.7e-10 70.5 201 33.8
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.7e-10 70.5 208 33.7
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 2.9e-10 69.7 205 32.2
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 3.7e-10 69.3 205 31.7
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 3.7e-10 69.3 204 30.4
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 3.7e-10 69.3 199 33.2
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 4.9e-10 68.9 198 35.9
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 8.3e-10 68.2 203 33.0
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.2e-09 66.2 201 34.8
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.2e-09 66.2 200 34.5
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 3.2e-09 66.2 205 32.7
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 3.2e-09 66.2 203 34.0
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 4.1e-09 65.9 198 32.8
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 5.4e-09 65.5 203 35.0
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 7.8e-08 61.6 204 29.9
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.0e-07 61.2 204 30.9
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.3e-07 60.8 166 34.3
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 3.9e-07 59.3 201 33.3
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 4.3e-06 55.8 198 29.8
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 4.3e-06 55.8 199 30.7


User provided reference genes

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