Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.1e-96 356.7 181 100.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 4.2e-53 211.8 176 60.8
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.2e-52 210.3 178 57.9
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 2.3e-51 206.1 175 58.3
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 4.8e-49 198.4 171 56.7
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 5.9e-47 191.4 178 56.2
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 5.9e-47 191.4 175 56.0
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.8e-46 188.7 175 57.7
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 3.8e-46 188.7 175 54.3
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 5.0e-46 188.3 176 53.4
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 5.0e-46 188.3 176 54.5
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 8.6e-46 187.6 177 53.1
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.5e-45 186.0 178 53.4
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.5e-45 186.0 172 57.0
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 9.5e-45 184.1 178 52.8
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.2e-44 183.7 180 51.1
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.2e-44 183.7 180 51.7
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 2.8e-44 182.6 176 54.0
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 3.6e-44 182.2 175 50.9
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 3.6e-44 182.2 175 52.6
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 6.1e-44 181.4 175 52.6
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.4e-43 180.3 178 52.8
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 3.0e-43 179.1 179 52.0
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 6.8e-43 177.9 175 52.0
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.2e-42 177.2 170 53.5
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 1.2e-42 177.2 170 51.2
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.5e-42 176.8 173 53.8
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.5e-42 176.8 174 51.1
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.0e-42 176.4 175 52.0
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 4.4e-42 175.3 177 52.0
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 7.5e-42 174.5 175 53.7
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 9.8e-42 174.1 175 50.3
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.8e-42 174.1 175 50.9
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.8e-42 174.1 175 50.3
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.3e-41 173.7 176 51.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.7e-41 173.3 174 50.6
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.7e-41 173.3 177 51.4
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.8e-41 172.6 181 50.8
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.7e-41 172.2 175 49.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 6.3e-41 171.4 175 51.4
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 6.3e-41 171.4 181 48.6
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.3e-41 171.4 181 50.3
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.4e-40 170.2 178 48.9
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.4e-40 169.5 173 51.4
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 5.4e-40 168.3 172 49.4
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 5.4e-40 168.3 176 52.3
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 7.0e-40 167.9 175 50.9
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 9.2e-40 167.5 172 50.0
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 9.2e-40 167.5 176 50.0
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.6e-39 166.8 175 49.1
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.6e-39 166.8 175 49.7
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 4.5e-39 165.2 175 51.4
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 7.8e-39 164.5 178 48.9
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.0e-38 164.1 176 49.4
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.3e-38 163.7 172 48.8
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.3e-38 163.7 169 50.3
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.3e-38 163.7 178 50.6
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.9e-38 162.5 178 48.3
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.9e-38 162.5 172 51.2
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 3.9e-38 162.2 175 48.6
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 6.6e-38 161.4 174 48.3
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.9e-37 159.8 177 50.3
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 7.3e-37 157.9 172 48.3
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.3e-37 157.9 175 47.4
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 7.3e-37 157.9 175 48.0
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.2e-36 157.1 167 49.7
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.1e-36 156.4 171 47.4
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.1e-36 156.4 171 46.8
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.0e-35 154.1 171 46.2
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.4e-35 153.7 179 47.5
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 2.3e-35 152.9 176 46.6
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 5.2e-35 151.8 178 45.5
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 6.8e-35 151.4 174 47.1
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.0e-34 149.8 167 46.1
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 2.0e-34 149.8 167 46.1
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.0e-34 149.8 176 46.0
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 3.4e-34 149.1 171 47.4
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.4e-34 149.1 168 47.6
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 1.3e-33 147.1 167 46.1
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.7e-33 146.7 188 44.1
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.2e-33 146.4 176 46.6
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.2e-33 146.4 168 47.0
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 2.9e-33 146.0 167 46.1
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 4.9e-33 145.2 173 43.4
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 6.4e-33 144.8 170 46.5
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.1e-32 144.1 167 47.3
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 1.4e-32 143.7 174 47.7
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.9e-32 143.3 173 44.5
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.9e-32 143.3 173 44.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.9e-32 143.3 167 46.7
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 1.9e-32 143.3 176 45.5
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 4.1e-32 142.1 168 45.8
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 4.1e-32 142.1 171 45.0
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 5.4e-32 141.7 165 43.6
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 6.0e-31 138.3 182 44.0
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.3e-30 137.1 175 44.6
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.3e-30 137.1 176 43.8
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.3e-30 137.1 171 45.0
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 2.3e-30 136.3 175 42.3
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.0e-30 136.0 173 43.4
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.1e-29 134.0 175 41.7
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.5e-29 133.7 115 55.7
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 5.6e-29 131.7 114 54.4
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 5.6e-29 131.7 175 44.0
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 5.6e-29 131.7 175 44.0
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 3.6e-28 129.0 175 41.1
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 3.6e-28 129.0 169 45.0
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 4.7e-28 128.6 179 40.2
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 6.2e-28 128.3 175 41.1
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 6.2e-28 128.3 175 41.1
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 2.3e-27 126.3 182 47.3
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 2.3e-27 126.3 175 41.1
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 3.1e-27 125.9 175 44.6
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 5.2e-27 125.2 171 40.9
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 6.8e-27 124.8 183 43.2
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.2e-26 124.0 176 40.9
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 7.5e-26 121.3 176 43.2
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.9e-25 119.4 177 41.8
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 6.4e-25 118.2 177 39.0
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 6.4e-25 118.2 180 40.0
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.9e-24 116.7 191 42.4
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.6e-23 113.6 175 38.9
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 2.7e-23 112.8 175 38.9
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 2.7e-23 112.8 175 38.9
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 4.6e-23 112.1 171 38.6
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 4.6e-23 112.1 173 38.2
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 4.6e-23 112.1 173 38.2
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 5.1e-22 108.6 108 50.0
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 5.2e-19 98.6 114 44.7
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 4.6e-15 85.5 191 30.9
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.2e-12 77.4 174 32.8
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.8e-11 73.6 112 37.5
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 6.8e-11 71.6 183 30.1


User provided reference genes

Program Settings