Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.9e-62 242.3 117 100.0
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.6e-16 89.7 123 46.3
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 6.0e-16 87.8 113 43.4
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.0e-15 87.0 110 39.1
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 2.3e-15 85.9 115 45.2
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.0e-15 85.5 125 40.8
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 3.0e-15 85.5 128 43.0
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.0e-15 85.5 115 45.2
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.1e-15 84.7 127 39.4
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.1e-15 84.7 116 42.2
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 2.5e-14 82.4 122 41.8
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 4.3e-14 81.6 118 40.7
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.3e-14 81.6 126 41.3
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 5.6e-14 81.3 109 45.9
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 9.5e-14 80.5 124 39.5
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.2e-13 80.1 140 36.4
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.6e-13 79.7 121 42.1
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.6e-13 79.7 122 39.3
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.1e-13 79.3 140 36.4
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.1e-13 77.4 140 35.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.1e-13 77.4 140 35.7
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 8.1e-13 77.4 113 41.6
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.8e-12 76.3 127 39.4
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.8e-12 76.3 125 40.0
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.1e-12 75.5 121 39.7
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.1e-12 75.5 121 39.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 4.0e-12 75.1 124 41.1
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 4.0e-12 75.1 113 36.3
Aa31LG8G7150 Aethionema arabicum HOM05D010457 ORTHO05D002434 5.2e-12 74.7 112 38.4
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.2e-12 74.7 133 39.1
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.2e-12 74.7 121 39.7
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 1.2e-11 73.6 130 39.2
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.0e-11 72.8 114 36.8
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 2.0e-11 72.8 108 38.0
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.6e-11 72.4 114 37.7
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.6e-11 72.4 129 39.5
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.6e-11 72.4 141 32.6
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 2.6e-11 72.4 127 37.8
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 3.4e-11 72.0 133 35.3
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 3.4e-11 72.0 130 36.9
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 4.4e-11 71.6 111 38.7
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.4e-11 71.6 116 42.2
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 4.4e-11 71.6 122 40.2
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 7.5e-11 70.9 116 35.3
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 7.5e-11 70.9 129 34.9
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 7.5e-11 70.9 127 37.8
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 7.5e-11 70.9 128 37.5
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 9.9e-11 70.5 120 35.8
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.3e-10 70.1 88 43.2
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 1.3e-10 70.1 133 36.8
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-10 70.1 124 36.3
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.7e-10 69.7 147 34.7
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 1.7e-10 69.7 135 35.6
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.7e-10 69.7 119 36.1
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.7e-10 69.7 119 36.1
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.7e-10 69.7 119 36.1
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 1.7e-10 69.7 119 37.0
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 2.9e-10 68.9 139 33.8
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 3.7e-10 68.6 115 37.4
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 3.7e-10 68.6 112 35.7
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.9e-10 68.2 133 38.3
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-10 68.2 116 40.5
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.9e-10 68.2 116 43.1
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 6.4e-10 67.8 126 35.7
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 8.3e-10 67.4 119 32.8
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 8.3e-10 67.4 119 32.8
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 8.3e-10 67.4 119 32.8
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 8.3e-10 67.4 129 36.4
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 8.3e-10 67.4 114 35.1
Carub.0003s2029 Capsella rubella HOM05D010457 ORTHO05D002434 1.1e-09 67.0 117 35.9
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.1e-09 67.0 139 36.0
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.4e-09 66.6 117 40.2
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 1.4e-09 66.6 118 37.3
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.4e-09 66.6 121 34.7
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 1.9e-09 66.2 131 37.4
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 1.9e-09 66.2 127 37.8
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.9e-09 66.2 127 34.6
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 2.4e-09 65.9 124 34.7
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.4e-09 65.9 115 33.9
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.4e-09 65.9 120 40.0
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.4e-09 65.9 124 34.7
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 2.4e-09 65.9 108 38.9
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.4e-09 65.9 119 37.8
BraA05t21736Z Brassica rapa HOM05D010457 ORTHO05D002434 3.2e-09 65.5 119 31.1
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 4.1e-09 65.1 112 33.9
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 4.1e-09 65.1 129 33.3
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 5.4e-09 64.7 110 40.0
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.1e-09 64.3 115 33.9
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 7.1e-09 64.3 133 36.1
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 9.2e-09 63.9 107 39.3
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 9.2e-09 63.9 118 33.9
A05p28590 Brassica napus HOM05D010457 ORTHO05D002434 1.6e-08 63.2 122 32.0
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 1.6e-08 63.2 109 34.9
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 2.1e-08 62.8 120 35.8
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 2.1e-08 62.8 129 31.8
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.7e-08 62.4 122 36.1
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 2.7e-08 62.4 115 35.7
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 3.5e-08 62.0 121 34.7
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 3.5e-08 62.0 108 38.0
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 3.5e-08 62.0 127 33.9
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 3.5e-08 62.0 118 38.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.6e-08 61.6 116 35.3
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 4.6e-08 61.6 132 32.6
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 4.6e-08 61.6 113 37.2
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 4.6e-08 61.6 128 35.2
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 4.6e-08 61.6 121 38.0
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 6.0e-08 61.2 124 33.9
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 6.0e-08 61.2 129 30.2
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 6.0e-08 61.2 114 36.8
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 7.8e-08 60.8 125 36.0
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 7.8e-08 60.8 116 34.5
Nitab4.5_0009398g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 7.8e-08 60.8 117 37.6
C01p43750 Brassica napus HOM05D010457 ORTHO05D002434 1.3e-07 60.1 118 32.2
BolC1t04334H Brassica oleracea HOM05D010457 ORTHO05D002434 1.3e-07 60.1 118 32.2
Glyma.17G014400 Glycine max HOM05D008677 ORTHO05D002434 1.3e-07 60.1 128 34.4
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.3e-07 60.1 111 39.6
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.7e-07 59.7 142 33.1
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.7e-07 59.7 121 33.9
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.7e-07 59.7 116 32.8
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 1.7e-07 59.7 113 37.2
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 1.7e-07 59.7 59 49.2
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.7e-07 59.7 59 49.2
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.3e-07 59.3 117 35.9
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 3.0e-07 58.9 128 33.6
MELO3C007385.2 Cucumis melo HOM05D003074 ORTHO05D002434 3.0e-07 58.9 122 36.1
Phvul.003G077900 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 3.0e-07 58.9 117 35.0
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 3.0e-07 58.9 126 30.2
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.9e-07 58.5 110 34.5
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.9e-07 58.5 110 34.5
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 3.9e-07 58.5 109 33.9
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 3.9e-07 58.5 112 35.7
BcaC09g48988 Brassica carinata HOM05D010457 ORTHO05D002434 5.1e-07 58.2 118 31.4
BraA01t03531Z Brassica rapa HOM05D010457 ORTHO05D002434 5.1e-07 58.2 119 31.1
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.1e-07 58.2 136 33.1
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 5.1e-07 58.2 124 35.5
ClCG01G022040 Citrullus lanatus HOM05D003074 ORTHO05D002434 5.1e-07 58.2 121 35.5
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 5.1e-07 58.2 130 33.8
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.1e-07 58.2 116 34.5
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 5.1e-07 58.2 105 38.1
VMungo1215G0276 Vigna mungo HOM05D008677 ORTHO05D002434 5.1e-07 58.2 122 32.8
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 6.6e-07 57.8 109 36.7
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.6e-07 57.8 122 33.6
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 6.6e-07 57.8 112 37.5
BcaB04g20658 Brassica carinata HOM05D010457 ORTHO05D002434 8.6e-07 57.4 121 28.1
A01p34340 Brassica napus HOM05D010457 ORTHO05D002434 8.6e-07 57.4 121 30.6
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.6e-07 57.4 116 33.6
Glyma.07G259800 Glycine max HOM05D008677 ORTHO05D002434 8.6e-07 57.4 130 33.8
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 8.6e-07 57.4 111 31.5
Sed0016637 Sechium edule HOM05D003074 ORTHO05D002434 8.6e-07 57.4 127 32.3
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 8.6e-07 57.4 124 33.1
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.1e-06 57.0 119 33.6
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.1e-06 57.0 115 33.9
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-06 57.0 94 41.5
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.5e-06 56.6 119 30.3
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.9e-06 56.2 111 38.7
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.5e-06 55.8 117 33.3
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 3.3e-06 55.5 109 33.9
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.3e-06 55.1 99 41.4
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 4.3e-06 55.1 109 34.9
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 4.3e-06 55.1 129 34.1
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 5.6e-06 54.7 96 40.6
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 5.6e-06 54.7 115 35.7
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.3e-06 54.3 111 36.9
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 7.3e-06 54.3 110 31.8
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.5e-06 53.9 132 33.3


User provided reference genes

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