Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 4.0e-238 827.8 445 100.0
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 3.7e-159 565.5 470 65.3
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 8.3e-159 564.3 483 63.6
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 5.4e-158 561.6 407 69.8
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 9.1e-158 560.8 490 63.1
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 1.0e-156 557.4 406 71.9
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 3.8e-156 555.4 492 63.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 6.6e-156 554.7 490 62.4
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.5e-155 553.5 406 68.7
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 2.5e-155 552.7 489 62.0
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 9.5e-155 550.8 477 63.1
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 6.1e-154 548.1 475 63.2
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.4e-153 547.0 470 63.6
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.2e-152 543.9 474 62.7
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.0e-152 543.1 498 61.4
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 2.0e-152 543.1 474 63.1
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 2.6e-152 542.7 402 69.4
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 4.4e-152 542.0 470 62.8
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.3e-151 540.4 468 62.2
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.7e-151 540.0 402 68.4
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 2.2e-151 539.7 477 62.7
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 2.8e-151 539.3 473 62.8
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 1.4e-150 537.0 488 61.3
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.8e-150 536.6 488 61.1
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.8e-150 536.6 476 62.2
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 2.4e-150 536.2 472 65.3
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.4e-150 535.0 476 62.0
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 9.2e-150 534.3 498 60.8
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 9.2e-150 534.3 488 60.5
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 1.0e-148 530.8 405 65.7
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.9e-148 529.3 474 60.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 2.9e-148 529.3 407 65.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 6.6e-148 528.1 489 58.9
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 8.6e-148 527.7 490 61.8
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 1.5e-147 526.9 482 59.8
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 1.9e-147 526.6 474 59.9
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 2.5e-147 526.2 488 60.0
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.3e-147 525.8 407 65.4
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 4.3e-147 525.4 454 62.1
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 5.6e-147 525.0 403 65.0
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 5.6e-147 525.0 490 59.2
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 7.3e-147 524.6 470 61.5
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 9.5e-147 524.2 404 65.3
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 1.2e-146 523.9 437 61.8
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.6e-146 523.5 487 59.8
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 1.6e-146 523.5 462 60.2
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 6.1e-146 521.5 481 60.3
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 8.0e-146 521.2 402 64.7
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 1.8e-145 520.0 403 66.0
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 3.1e-145 519.2 405 63.2
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 2.6e-144 516.2 405 62.7
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 3.4e-144 515.8 491 58.5
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.5e-144 514.6 458 60.5
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 7.5e-144 514.6 476 59.5
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 9.8e-144 514.2 472 59.3
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 1.7e-143 513.5 491 58.2
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.7e-143 513.5 405 62.2
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.4e-142 510.4 516 57.4
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 1.9e-142 510.0 470 58.1
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 4.1e-142 508.8 405 62.5
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 5.4e-142 508.4 492 58.1
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 1.2e-141 507.3 394 65.2
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.0e-141 506.5 481 57.4
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 7.8e-141 504.6 485 56.1
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 3.3e-139 499.2 395 66.3
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 4.3e-139 498.8 406 64.3
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 7.3e-139 498.0 503 56.9
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 9.5e-139 497.7 404 63.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 2.8e-138 496.1 404 63.1
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 4.7e-138 495.4 488 57.0
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.1e-137 494.2 404 61.1
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 3.1e-137 492.7 405 61.0
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 4.0e-137 492.3 485 55.9
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 9.8e-136 487.6 404 59.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.3e-135 487.3 406 60.1
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.3e-135 487.3 486 59.3
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 2.2e-135 486.5 406 60.3
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.9e-135 485.3 486 55.6
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 6.4e-135 485.0 404 60.1
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.4e-134 483.8 404 60.1
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 1.4e-134 483.8 385 64.2
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 3.5e-133 479.2 479 54.5
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 6.0e-133 478.4 477 54.5
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.3e-132 477.2 417 57.8
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 3.9e-132 475.7 491 53.2
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 3.3e-131 472.6 482 55.4
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 9.5e-131 471.1 489 53.0
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.2e-130 470.7 430 58.6
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.7e-127 460.3 478 55.2
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 8.3e-127 458.0 401 59.6
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.8e-125 451.4 458 55.2
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 2.5e-123 446.4 316 69.9
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 4.3e-123 445.7 385 59.5
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 9.2e-118 427.9 395 55.2
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 5.1e-116 422.2 357 58.0
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 2.4e-113 413.3 404 53.2
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 1.2e-112 411.0 395 52.7
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.1e-109 400.2 422 53.3
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 2.9e-103 379.8 415 52.0
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 1.1e-102 377.9 395 48.4
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 9.3e-102 374.8 367 55.6
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.1e-98 363.6 434 50.2
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.2e-95 353.6 231 73.6
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 5.7e-91 339.0 407 44.7
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.8e-90 336.7 398 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 3.1e-89 333.2 397 43.8
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 1.5e-88 330.9 398 43.0
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 1.6e-82 310.8 395 40.8
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 8.8e-76 288.5 382 38.5
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 1.1e-54 218.4 335 36.4
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 9.8e-51 205.3 134 73.9
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.2e-45 188.3 168 55.4
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 2.8e-42 177.2 315 32.7
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 8.9e-28 129.0 114 58.8
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 5.8e-27 126.3 338 34.3
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 4.9e-26 123.2 89 66.3
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 3.6e-21 107.1 75 70.7
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 4.7e-21 106.7 316 24.1
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.4e-20 105.1 205 35.1
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 4.4e-19 100.1 126 45.2
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 5.2e-12 76.6 51 74.5
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 1.3e-07 62.0 188 28.2
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 6.6e-07 59.7 198 27.3
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 8.6e-07 59.3 173 27.7
BraA02t07229Z Brassica rapa HOM05D011432 ORTHO05D014939 1.9e-06 58.2 40 62.5
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.5e-06 57.8 89 42.7


User provided reference genes

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