Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.1e-152 542.3 275 100.0
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 4.5e-30 136.0 292 36.3
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 4.6e-27 125.9 284 35.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.8e-24 116.7 271 34.7
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.0e-22 110.5 278 34.5
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.4e-22 109.8 263 35.7
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 8.5e-21 105.1 302 29.8
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.1e-20 104.8 263 33.5
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.9e-20 104.0 284 31.3
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 9.4e-20 101.7 253 31.2
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.6e-19 99.8 257 33.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 7.9e-19 98.6 272 33.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.0e-18 98.2 258 34.9
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.0e-18 98.2 143 39.9
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.4e-18 97.8 277 30.3
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.0e-18 96.7 284 31.3
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.7e-18 95.5 267 32.6
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.1e-17 94.7 286 32.9
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.1e-17 94.7 266 33.1
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 7.4e-17 92.0 284 30.6
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.7e-17 91.7 266 32.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.7e-16 89.7 251 31.1
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 4.8e-16 89.4 288 28.1
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 8.2e-16 88.6 285 27.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 8.2e-16 88.6 289 32.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.8e-15 87.4 251 31.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.8e-15 87.4 275 29.8
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.8e-15 87.4 300 28.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 2.4e-15 87.0 287 30.3
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.4e-15 87.0 284 31.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 4.1e-15 86.3 260 30.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 5.3e-15 85.9 275 29.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.2e-14 84.7 285 28.1
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-14 84.7 59 62.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-14 84.7 59 62.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.0e-14 84.0 88 46.6
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.6e-14 83.6 280 28.9
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.6e-14 83.6 289 31.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.5e-14 83.2 270 31.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 4.5e-14 82.8 288 29.9
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.9e-14 82.4 107 42.1
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 5.9e-14 82.4 265 30.2
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.9e-14 82.4 281 31.0
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.3e-13 81.3 117 37.6
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.3e-13 81.3 224 29.9
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.3e-13 81.3 261 27.6
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.7e-13 80.9 277 29.6
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.9e-13 80.1 272 27.9
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 5.0e-13 79.3 277 27.4
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.1e-12 78.2 283 28.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.5e-12 77.0 288 28.1
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.2e-12 76.6 261 31.0
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.2e-12 76.6 261 31.0
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.2e-12 76.3 250 29.2
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 4.2e-12 76.3 283 28.3
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.2e-12 76.3 97 41.2
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.2e-12 76.3 97 41.2
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.2e-12 75.5 266 28.6
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.6e-11 74.3 101 37.6
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.1e-11 73.9 253 26.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.1e-11 73.9 278 29.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.1e-11 73.9 267 28.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.1e-11 73.9 266 28.9
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.1e-11 73.9 291 28.2
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.7e-11 73.6 109 41.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.7e-11 73.6 254 29.5
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 3.6e-11 73.2 52 61.5
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.6e-11 73.2 261 30.3
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 3.6e-11 73.2 281 28.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.1e-11 72.4 120 37.5
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 6.1e-11 72.4 253 29.2
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 6.1e-11 72.4 253 29.2
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 6.1e-11 72.4 253 29.2
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 6.1e-11 72.4 263 28.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 8.0e-11 72.0 279 28.3
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 8.0e-11 72.0 258 31.0
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.4e-10 71.2 280 28.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.4e-10 71.2 282 28.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-10 70.9 130 34.6
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.3e-10 70.5 255 28.6
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.3e-10 70.5 96 40.6
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-10 70.5 275 28.4
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.3e-10 70.5 54 55.6
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.3e-10 70.5 254 28.7
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.3e-10 70.5 247 26.3
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.0e-10 70.1 248 29.0
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.0e-10 70.1 58 50.0
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 3.0e-10 70.1 129 36.4
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 3.0e-10 70.1 119 33.6
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.0e-10 70.1 103 38.8
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.0e-10 70.1 265 27.9
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 4.0e-10 69.7 120 35.8
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 4.0e-10 69.7 248 29.0
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 4.0e-10 69.7 106 37.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 4.0e-10 69.7 278 28.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 4.0e-10 69.7 54 55.6
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 4.0e-10 69.7 277 28.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.0e-10 69.7 106 36.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 6.7e-10 68.9 250 28.8
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 8.8e-10 68.6 178 30.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 8.8e-10 68.6 178 30.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.8e-10 68.6 246 25.2
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.5e-09 67.8 243 27.2
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.5e-09 67.8 66 50.0
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.0e-09 67.4 278 28.4
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.0e-09 67.4 57 47.4
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.6e-09 67.0 99 38.4
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 2.6e-09 67.0 58 46.6
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.4e-09 66.2 246 27.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 5.7e-09 65.9 86 39.5
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 7.5e-09 65.5 52 53.8
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.7e-08 64.3 290 26.2
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.2e-08 63.9 43 58.1
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 3.7e-08 63.2 275 26.5
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.7e-08 63.2 70 50.0
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 4.8e-08 62.8 68 45.6
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.2e-08 62.0 294 25.5
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 8.2e-08 62.0 85 35.3
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.4e-07 61.2 50 54.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.8e-07 60.8 160 31.9
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 2.0e-06 57.4 31 71.0
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 3.5e-06 56.6 128 29.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 5.9e-06 55.8 51 52.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 7.7e-06 55.5 140 30.0


User provided reference genes

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