Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.4e-225 784.6 393 100.0
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.0e-209 732.3 393 94.1
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 6.4e-155 551.2 388 71.9
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 8.6e-152 540.8 386 69.9
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 4.7e-150 535.0 389 68.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.2e-149 531.6 389 68.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.9e-146 523.1 381 68.8
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 7.1e-146 521.2 386 67.1
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.6e-145 520.0 375 67.2
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 2.1e-145 519.6 386 66.1
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.1e-145 519.6 379 67.3
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.5e-145 518.8 381 68.2
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.7e-144 516.5 381 68.2
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.3e-144 516.2 391 64.2
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 3.0e-144 515.8 385 66.2
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.9e-144 515.4 381 68.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 5.1e-144 515.0 388 65.2
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 5.1e-144 515.0 387 64.6
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.9e-143 513.1 386 66.3
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 3.3e-143 512.3 380 66.8
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 5.6e-143 511.5 380 65.5
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 5.6e-143 511.5 392 66.6
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 9.6e-143 510.8 376 67.6
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 2.1e-142 509.6 378 65.3
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.6e-142 508.8 380 65.5
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 3.6e-142 508.8 374 66.3
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 4.8e-142 508.4 387 65.1
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 6.2e-142 508.1 375 66.9
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 6.2e-142 508.1 380 65.3
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.1e-141 505.8 374 66.3
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 3.1e-141 505.8 382 65.7
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 3.4e-140 502.3 377 66.8
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 4.5e-140 501.9 384 65.1
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 4.5e-140 501.9 379 63.9
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 9.9e-140 500.7 375 65.9
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.3e-139 500.4 379 63.6
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 2.2e-139 499.6 377 66.0
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 2.9e-139 499.2 377 64.7
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 2.9e-139 499.2 382 64.7
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 4.9e-139 498.4 376 65.4
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 4.9e-139 498.4 376 64.9
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.4e-138 496.9 376 65.7
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.9e-138 496.5 377 65.5
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 3.2e-138 495.7 384 63.0
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 3.2e-138 495.7 379 63.1
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 4.2e-138 495.4 381 64.0
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 5.4e-138 495.0 376 64.9
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 5.4e-138 495.0 376 64.9
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 5.4e-138 495.0 377 65.5
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 7.1e-138 494.6 379 63.6
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 9.3e-138 494.2 380 64.5
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 9.3e-138 494.2 379 62.8
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.1e-137 493.0 381 62.7
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 3.5e-137 492.3 376 63.8
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 3.5e-137 492.3 375 64.8
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 6.0e-137 491.5 376 65.7
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 7.9e-137 491.1 378 64.3
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.9e-137 491.1 375 64.3
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.0e-136 490.7 385 63.9
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.0e-136 490.7 376 64.4
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.8e-136 490.0 371 65.5
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.8e-136 490.0 367 65.9
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.3e-136 489.6 380 63.9
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 3.0e-136 489.2 388 62.6
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 3.9e-136 488.8 376 64.6
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 5.1e-136 488.4 384 62.0
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 6.7e-136 488.0 386 62.2
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.9e-135 486.5 373 62.5
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.9e-135 486.5 385 62.9
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.9e-135 486.5 386 62.7
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.5e-135 486.1 374 64.2
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.3e-135 485.7 368 66.8
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 5.6e-135 485.0 375 63.5
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.4e-135 484.6 374 66.8
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 9.6e-135 484.2 376 63.0
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.3e-134 483.8 374 66.8
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.1e-134 483.0 377 64.5
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.6e-134 482.3 401 60.6
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.8e-134 481.9 382 62.8
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 6.2e-134 481.5 379 62.5
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 6.2e-134 481.5 376 63.8
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 1.4e-133 480.3 386 63.0
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.5e-132 476.9 354 67.2
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.4e-132 475.7 380 61.8
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 1.3e-131 473.8 380 62.6
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.4e-131 471.5 371 65.0
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.4e-131 471.5 371 65.0
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 1.4e-130 470.3 443 55.5
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.1e-130 468.0 367 64.3
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.1e-129 466.5 381 59.8
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 3.3e-127 459.1 376 62.0
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.1e-125 454.1 379 60.2
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 5.8e-124 448.4 378 60.3
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 9.3e-122 441.0 382 60.5
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.0e-120 437.6 397 59.4
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 4.8e-118 428.7 374 56.7
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 9.0e-117 424.5 366 58.7
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 4.5e-116 422.2 417 55.2
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.5e-116 422.2 372 59.1
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.9e-115 419.5 395 58.0
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 6.1e-113 411.8 370 57.6
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 6.9e-109 398.3 373 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.1e-106 391.0 384 53.9
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 9.4e-106 387.9 390 53.3
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.8e-104 383.6 381 54.1
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 2.3e-104 383.3 374 53.5
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 6.9e-101 371.7 381 52.5
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.5e-98 363.2 374 52.7
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 9.4e-98 361.3 387 49.9
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.6e-92 343.2 324 57.7
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.6e-84 317.4 317 53.0
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.3e-83 314.3 390 46.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.1e-82 311.2 250 63.2
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 2.7e-81 306.6 267 56.6
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 6.1e-81 305.4 408 44.1
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.7e-78 296.2 227 61.2
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.5e-74 282.3 176 75.0
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.5e-74 282.3 176 75.0
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.9e-62 243.4 388 40.2
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 4.3e-50 203.0 167 56.9
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 7.3e-50 202.2 412 36.2
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.2e-44 184.9 119 71.4
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 8.9e-40 168.7 398 33.7
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.0e-36 156.0 98 73.5
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.3e-34 150.2 137 56.2
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-34 149.8 147 53.7
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.1e-28 131.0 392 30.4
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 5.1e-27 126.3 82 68.3
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.3e-10 70.1 90 48.9
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 1.6e-09 68.2 84 44.0
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-08 64.7 72 47.2
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-08 64.7 72 47.2
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 5.8e-07 59.7 315 24.1


User provided reference genes

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