Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.5e-228 795.8 408 100.0
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 8.7e-131 471.1 729 44.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.0e-38 165.2 617 26.4
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.9e-37 161.0 620 27.4
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.1e-36 157.5 670 24.8
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.2e-34 151.8 622 26.7
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 4.2e-32 143.3 603 26.4
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.8e-27 127.9 620 25.2
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 4.0e-27 126.7 647 24.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 4.0e-27 126.7 636 22.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.9e-25 120.6 628 24.8
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 4.9e-25 119.8 657 24.4
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.2e-24 116.7 620 24.0
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.7e-23 114.0 286 31.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.5e-21 108.2 620 23.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.5e-21 107.5 626 24.3
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.6e-20 104.8 164 42.1
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 2.1e-20 104.4 625 23.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.7e-20 103.6 76 63.2
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.4e-19 101.7 164 40.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.1e-19 100.1 304 30.6
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.9e-19 99.4 103 48.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.9e-19 99.4 103 48.5
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 9.0e-19 99.0 219 33.8
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.5e-18 98.2 73 60.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.6e-18 97.4 95 49.5
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 4.5e-18 96.7 100 49.0
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 4.5e-18 96.7 73 61.6
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 5.8e-18 96.3 73 61.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.8e-18 96.3 157 41.4
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 5.8e-18 96.3 157 40.8
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.3e-17 95.1 157 40.8
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 2.2e-17 94.4 624 23.6
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 6.5e-17 92.8 84 48.8
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.5e-17 92.8 73 58.9
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 6.5e-17 92.8 111 44.1
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 8.4e-17 92.4 109 45.0
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.1e-16 92.0 100 47.0
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.4e-16 91.7 100 46.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.9e-16 91.3 76 55.3
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.2e-16 90.1 129 38.0
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 5.5e-16 89.7 86 48.8
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 5.5e-16 89.7 73 54.8
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 7.1e-16 89.4 93 50.5
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.1e-16 89.4 78 55.1
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 7.1e-16 89.4 73 57.5
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 9.3e-16 89.0 72 58.3
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 9.3e-16 89.0 121 43.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.2e-15 88.6 161 34.8
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.2e-15 88.6 76 53.9
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.2e-15 88.6 76 51.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.6e-15 88.2 91 42.9
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 2.1e-15 87.8 76 56.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 2.1e-15 87.8 73 54.8
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.7e-15 87.4 140 32.9
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 4.6e-15 86.7 73 54.8
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 4.6e-15 86.7 91 50.5
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.3e-14 85.1 72 56.9
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.3e-14 85.1 72 56.9
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.8e-14 84.7 100 43.0
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.8e-14 84.7 73 54.8
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.3e-14 84.3 91 48.4
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 3.0e-14 84.0 164 36.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 3.9e-14 83.6 66 59.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 6.7e-14 82.8 77 48.1
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 8.7e-14 82.4 73 54.8
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.1e-13 82.0 94 44.7
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.1e-13 82.0 70 54.3
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.5e-13 80.9 73 53.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.3e-13 80.5 101 42.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 4.3e-13 80.1 98 39.8
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 4.3e-13 80.1 73 52.1
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 4.3e-13 80.1 161 34.8
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 7.4e-13 79.3 79 45.6
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 9.7e-13 79.0 86 40.7
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.6e-12 78.2 70 50.0
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.6e-12 78.2 535 22.1
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.6e-12 78.2 98 42.9
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.8e-12 77.4 66 50.0
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 3.7e-12 77.0 120 37.5
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 4.8e-12 76.6 76 48.7
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.4e-11 74.3 76 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.6e-10 70.9 80 42.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 5.9e-10 69.7 74 43.2
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.3e-09 68.6 96 38.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.3e-09 68.6 82 39.0
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-09 68.6 73 45.2
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.7e-09 68.2 83 38.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.7e-09 68.2 200 34.5
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.2e-09 67.8 112 36.6
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.2e-09 67.8 73 41.1
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 5.0e-09 66.6 73 41.1
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.0e-09 66.6 73 45.2
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 5.0e-09 66.6 73 45.2
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.0e-09 66.6 73 47.9
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 8.5e-09 65.9 109 36.7
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.9e-08 64.7 73 45.2
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 3.2e-08 63.9 73 43.8
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.2e-08 63.9 73 43.8
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.2e-08 63.5 79 41.8
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.5e-08 63.2 89 38.2
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.6e-07 61.6 463 21.4
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.1e-07 61.2 75 41.3
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.7e-07 60.8 110 33.6
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 6.1e-07 59.7 77 39.0
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 7.9e-07 59.3 75 38.7
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.4e-06 58.5 119 30.3
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 5.1e-06 56.6 87 35.6
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 5.1e-06 56.6 87 35.6


User provided reference genes

Program Settings