Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.4e-34 149.1 73 100.0
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.7e-21 105.5 58 86.2
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.3e-21 105.1 57 87.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.3e-21 105.1 57 87.7
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.3e-21 105.1 57 87.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.3e-21 105.1 57 87.7
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 3.8e-21 104.4 58 84.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 5.0e-21 104.0 58 84.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 5.0e-21 104.0 58 84.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 8.6e-21 103.2 58 84.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 8.6e-21 103.2 58 82.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 8.6e-21 103.2 58 82.8
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 8.6e-21 103.2 58 82.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 84.5
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 82.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 84.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 82.8
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-20 102.8 57 86.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 82.8
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.1e-20 102.8 64 79.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 82.8
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 82.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.1e-20 102.8 58 84.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 81.0
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 81.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.9e-20 102.1 57 84.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.9e-20 102.1 58 82.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.5e-20 101.7 57 84.2
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.5e-20 101.7 58 82.8
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.5e-20 101.7 58 82.8
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 3.3e-20 101.3 58 81.0
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.3e-20 101.3 63 79.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.3e-20 101.3 57 84.2
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.3e-20 101.3 63 79.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 4.2e-20 100.9 58 81.0
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 5.5e-20 100.5 58 79.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 5.5e-20 100.5 58 79.3
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 5.5e-20 100.5 64 76.6
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 5.5e-20 100.5 64 78.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 7.2e-20 100.1 58 81.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 7.2e-20 100.1 57 82.5
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 7.2e-20 100.1 56 82.1
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 9.5e-20 99.8 58 79.3
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 9.5e-20 99.8 58 81.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 9.5e-20 99.8 58 81.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 9.5e-20 99.8 58 79.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.2e-19 99.4 58 81.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.6e-19 99.0 63 77.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.6e-19 99.0 63 77.8
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.1e-19 98.6 57 80.7
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.1e-19 98.6 73 68.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 2.1e-19 98.6 73 68.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.1e-19 98.6 58 79.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.1e-19 98.6 73 68.5
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.8e-19 98.2 58 79.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.8e-19 98.2 73 68.5
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 3.6e-19 97.8 56 82.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 3.6e-19 97.8 57 80.7
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.6e-19 97.8 58 77.6
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.7e-19 97.4 64 73.4
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 4.7e-19 97.4 64 76.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.7e-19 97.4 57 78.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 4.7e-19 97.4 57 80.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.1e-19 97.1 57 78.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 6.1e-19 97.1 73 67.1
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 8.0e-19 96.7 57 77.2
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 8.0e-19 96.7 57 77.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.0e-19 96.7 58 77.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.0e-18 96.3 58 75.9
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.0e-18 96.3 58 77.6
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.4e-18 95.9 64 73.4
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.4e-18 95.9 57 77.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.8e-18 95.5 63 74.6
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-18 95.5 58 77.6
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.3e-18 95.1 64 73.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 3.0e-18 94.7 64 73.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 3.0e-18 94.7 63 74.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 4.0e-18 94.4 64 73.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 4.0e-18 94.4 64 73.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 4.0e-18 94.4 57 77.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 6.8e-18 93.6 64 71.9
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.8e-18 93.6 64 71.9
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 8.9e-18 93.2 64 73.4
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 8.9e-18 93.2 64 73.4
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.2e-17 92.8 58 74.1
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.2e-17 92.8 58 74.1
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.2e-17 92.8 58 72.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.0e-17 92.0 57 75.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.6e-17 91.7 57 78.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.6e-17 91.7 57 73.7
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.7e-17 90.5 57 77.2
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 9.8e-17 89.7 62 71.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 9.8e-17 89.7 57 70.2
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.7e-16 89.0 57 73.7
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.2e-16 88.6 57 70.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.2e-16 88.6 57 71.9
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.8e-16 88.2 57 70.2
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.9e-16 87.4 61 70.5
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.3e-16 87.0 64 67.2
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.4e-15 85.9 69 65.2
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.8e-15 85.5 63 66.7
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.0e-14 82.0 62 66.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.0e-14 82.0 62 66.1
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 7.8e-14 80.1 56 69.6
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.9e-13 78.2 61 63.9
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 3.9e-13 77.8 61 62.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 9.5e-12 73.2 50 68.0
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.2e-11 72.8 47 70.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.6e-11 72.4 49 65.3
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 4.7e-11 70.9 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 6.8e-10 67.0 54 55.6
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 3.4e-09 64.7 59 54.2
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.9e-07 58.9 47 57.4


User provided reference genes

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