Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004950 Simmondsia chinensis HOM05D000827 ORTHO05D001318 1.5e-56 222.6 112 100.0
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 4.4e-16 88.2 87 59.8
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 1.1e-14 83.6 102 52.0
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 1.4e-14 83.2 71 64.8
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 2.4e-14 82.4 98 53.1
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 4.1e-14 81.6 93 58.1
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 5.3e-14 81.3 86 58.1
Cfa004619 Carpinus fangiana HOM05D000827 ORTHO05D001318 9.1e-14 80.5 101 52.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.2e-13 80.1 77 59.7
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 1.6e-13 79.7 98 53.1
FAN27G0395 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.6e-13 79.7 76 59.2
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.0e-13 79.3 93 53.8
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.0e-13 79.3 93 54.8
EL10Ac6g15667 Beta vulgaris HOM05D000827 ORTHO05D001318 2.7e-13 79.0 99 47.5
ClCG02G006640 Citrullus lanatus HOM05D000827 ORTHO05D001318 2.7e-13 79.0 101 53.5
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 3.5e-13 78.6 91 56.0
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 4.5e-13 78.2 75 57.3
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 7.7e-13 77.4 100 50.0
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 7.7e-13 77.4 101 49.5
Hund16377 Selenicereus undatus HOM05D000827 ORTHO05D001318 1.3e-12 76.6 102 48.0
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 2.2e-12 75.9 93 50.5
TWI79G0611 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 2.9e-12 75.5 94 50.0
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 5.0e-12 74.7 100 48.0
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 8.5e-12 73.9 94 50.0
ATR0661G022 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.1e-11 73.6 84 53.6
CiPaw.05G014400 Carya illinoinensis HOM05D000827 ORTHO05D001318 1.1e-11 73.6 105 49.5
Thecc.02G112800 Theobroma cacao HOM05D000827 ORTHO05D001318 1.1e-11 73.6 101 49.5
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.5e-11 73.2 82 52.4
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.5e-11 73.2 55 65.5
PGR042G0825 Punica granatum HOM05D000827 ORTHO05D001318 1.9e-11 72.8 84 56.0
Cpa.g.sc200.3 Carica papaya HOM05D000827 ORTHO05D001318 2.5e-11 72.4 84 52.4
MELO3C018505.2 Cucumis melo HOM05D000827 ORTHO05D001318 2.5e-11 72.4 49 71.4
CsaV3_7G007990 Cucumis sativus L. HOM05D000827 ORTHO05D001318 2.5e-11 72.4 91 48.4
Gohir.D12G020900 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.5e-11 72.4 83 53.0
Manes.10G072600 Manihot esculenta HOM05D000827 ORTHO05D001318 2.5e-11 72.4 108 45.4
Gorai.008G021200 Gossypium raimondii HOM05D000827 ORTHO05D001318 3.2e-11 72.0 83 53.0
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 3.2e-11 72.0 99 47.5
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 5.5e-11 71.2 88 48.9
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 5.5e-11 71.2 88 48.9
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 5.5e-11 71.2 90 51.1
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 5.5e-11 71.2 88 50.0
Migut.B00414 Erythranthe guttata HOM05D000827 ORTHO05D001318 7.2e-11 70.9 95 46.3
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 7.2e-11 70.9 80 52.5
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 9.4e-11 70.5 51 70.6
Medtr5g005200 Medicago truncatula HOM05D000827 ORTHO05D001318 9.4e-11 70.5 43 74.4
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 1.2e-10 70.1 55 67.3
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 1.2e-10 70.1 43 76.7
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.2e-10 70.1 78 55.1
Gohir.A12G020600 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.6e-10 69.7 83 51.8
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 1.6e-10 69.7 106 44.3
Os12g0507500 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 1.6e-10 69.7 74 56.8
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.6e-10 69.7 63 58.7
Nitab4.5_0002017g0070 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.1e-10 69.3 88 50.0
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 3.6e-10 68.6 75 53.3
Sopen10g020980 Solanum pennellii HOM05D000827 ORTHO05D001318 3.6e-10 68.6 91 48.4
PGSC0003DMG400023191 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.6e-10 68.6 87 49.4
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 4.7e-10 68.2 91 49.5
MSTRG.20202 Avicennia marina HOM05D000827 ORTHO05D001318 4.7e-10 68.2 51 70.6
Gorai.005G233400 Gossypium raimondii HOM05D000827 ORTHO05D001318 4.7e-10 68.2 55 61.8
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 4.7e-10 68.2 82 50.0
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 6.1e-10 67.8 87 48.3
MSTRG.16697 Avicennia marina HOM05D000827 ORTHO05D001318 6.1e-10 67.8 51 70.6
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 6.1e-10 67.8 85 49.4
TAR381G1509 Trochodendron aralioides HOM05D000827 ORTHO05D001318 6.1e-10 67.8 67 55.2
DCAR_001667 Daucus carota HOM05D000827 ORTHO05D001318 8.0e-10 67.4 80 48.8
Migut.A00713 Erythranthe guttata HOM05D000827 ORTHO05D001318 8.0e-10 67.4 93 51.6
Lj1g0012448 Lotus japonicus HOM05D000827 ORTHO05D001318 8.0e-10 67.4 47 68.1
CANSAT25G0462 Cannabis sativa HOM05D000827 ORTHO05D001318 1.4e-09 66.6 102 47.1
DCAR_021969 Daucus carota HOM05D000827 ORTHO05D001318 1.4e-09 66.6 47 68.1
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 1.4e-09 66.6 90 48.9
PGSC0003DMG400009782 Solanum tuberosum HOM05D000827 ORTHO05D001318 1.4e-09 66.6 91 48.4
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.8e-09 66.2 81 51.9
Migut.I00273 Erythranthe guttata HOM05D000827 ORTHO05D001318 1.8e-09 66.2 81 55.6
Lj5A217G84 Lonicera japonica HOM05D000827 ORTHO05D001318 1.8e-09 66.2 94 50.0
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.8e-09 66.2 71 53.5
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 2.3e-09 65.9 88 46.6
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 2.3e-09 65.9 43 72.1
Dinv15782 Davidia involucrata HOM05D000827 ORTHO05D001318 2.3e-09 65.9 51 68.6
Actinidia04377 Actinidia chinensis HOM05D000827 ORTHO05D001318 3.0e-09 65.5 100 50.0
CAN.G606.32 Capsicum annuum HOM05D000827 ORTHO05D001318 3.0e-09 65.5 98 46.9
Dinv42213 Davidia involucrata HOM05D000827 ORTHO05D001318 3.0e-09 65.5 98 50.0
Glyma.11G001000 Glycine max HOM05D000827 ORTHO05D001318 3.0e-09 65.5 106 40.6
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 3.0e-09 65.5 106 46.2
SalBow6G5645 Salvia bowleyana HOM05D000827 ORTHO05D001318 4.0e-09 65.1 78 55.1
THA.LOC104807230 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 4.0e-09 65.1 81 53.1
Nitab4.5_0001480g0030 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.2e-09 64.7 96 49.0
Phvul.002G052700 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 5.2e-09 64.7 49 63.3
PGSC0003DMG400025852 Solanum tuberosum HOM05D000827 ORTHO05D001318 5.2e-09 64.7 51 64.7
C07p60510 Brassica napus HOM05D000827 ORTHO05D001318 6.8e-09 64.3 95 44.2
BolC7t46483H Brassica oleracea HOM05D000827 ORTHO05D001318 6.8e-09 64.3 95 44.2
Nn5g30486 Nelumbo nucifera HOM05D000827 ORTHO05D001318 6.8e-09 64.3 96 42.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 6.8e-09 64.3 62 58.1
unitig_744.g24220 Utricularia gibba HOM05D000827 ORTHO05D001318 6.8e-09 64.3 49 69.4
ATR0618G387 Amborella trichopoda HOM05D000827 ORTHO05D001318 8.8e-09 63.9 62 54.8
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 8.8e-09 63.9 82 47.6
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 8.8e-09 63.9 58 56.9
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 1.2e-08 63.5 100 46.0
Glyma.01G243300 Glycine max HOM05D000827 ORTHO05D001318 1.2e-08 63.5 89 46.1
Solyc01g107330.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 1.2e-08 63.5 50 64.0
Sopen01g049570 Solanum pennellii HOM05D000827 ORTHO05D001318 1.2e-08 63.5 50 64.0
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.5e-08 63.2 83 47.0
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 1.5e-08 63.2 81 48.1
TPR.G8307 Trifolium pratense HOM05D000827 ORTHO05D001318 1.5e-08 63.2 101 42.6
Oeu010412.1 Olea europaea HOM05D000827 ORTHO05D001318 2.0e-08 62.8 78 55.1
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 2.6e-08 62.4 73 47.9
arahy.Tifrunner.gnm1.ann1.4BPU9Y Arachis hypogaea HOM05D000827 ORTHO05D001318 2.6e-08 62.4 43 67.4
arahy.Tifrunner.gnm1.ann1.MJPM8B Arachis hypogaea HOM05D000827 ORTHO05D001318 2.6e-08 62.4 43 67.4
Nitab4.5_0004685g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.6e-08 62.4 108 46.3
Psat4g228120 Pisum sativum HOM05D000827 ORTHO05D001318 2.6e-08 62.4 97 40.2
SGA_v2.0_scaffold13G06620 Striga asiatica HOM05D000827 ORTHO05D001318 2.6e-08 62.4 59 59.3
vmacro19463 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 2.6e-08 62.4 86 52.3
Actinidia34382 Actinidia chinensis HOM05D000827 ORTHO05D001318 3.4e-08 62.0 75 53.3
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 3.4e-08 62.0 97 39.2
Oeu016085.1 Olea europaea HOM05D000827 ORTHO05D001318 4.4e-08 61.6 70 54.3
VMungo1215G3336 Vigna mungo HOM05D000827 ORTHO05D001318 4.4e-08 61.6 57 54.4
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 5.7e-08 61.2 87 41.4
Thhalv10026522m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 5.7e-08 61.2 81 49.4
A03p62820 Brassica napus HOM05D000827 ORTHO05D001318 9.8e-08 60.5 83 47.0
BraA03t15358Z Brassica rapa HOM05D000827 ORTHO05D001318 9.8e-08 60.5 83 47.0
Thhalv10022904m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 1.3e-07 60.1 87 44.8
BcaC01g00917 Brassica carinata HOM05D000827 ORTHO05D001318 1.7e-07 59.7 94 43.6
Sabra16G0186400 Salix brachista HOM05D000827 ORTHO05D001318 1.7e-07 59.7 38 68.4
CDE04G0823 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 2.8e-07 58.9 44 63.6
PSO541G1858 Papaver somniferum HOM05D000827 ORTHO05D001318 3.7e-07 58.5 41 65.9
PSO675G7513 Papaver somniferum HOM05D000827 ORTHO05D001318 3.7e-07 58.5 41 65.9
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 4.8e-07 58.2 86 43.0
SalBow5G5239 Salvia bowleyana HOM05D000827 ORTHO05D001318 6.3e-07 57.8 89 41.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.3e-07 57.8 66 48.5
BcaC06g30919 Brassica carinata HOM05D000827 ORTHO05D001318 8.3e-07 57.4 44 61.4
CDE06G1156 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 8.3e-07 57.4 79 48.1
Zm00001eb264760 Zea mays HOM05D000827 ORTHO05D001318 8.3e-07 57.4 60 50.0
CSS0048380 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.1e-06 55.5 102 44.1
Oeu011145.1 Olea europaea HOM05D001121 ORTHO05D001256 4.1e-06 55.1 48 62.5
TWI32G0689 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 4.1e-06 55.1 43 62.8
Os03g0761000 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 5.4e-06 54.7 40 65.0
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 5.4e-06 54.7 43 67.4
Sed0016100 Sechium edule HOM05D000827 ORTHO05D001318 7.0e-06 54.3 109 38.5
Cc02_g18450 Coffea canephora HOM05D000827 ORTHO05D001576 9.1e-06 53.9 44 54.5


User provided reference genes

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