Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004630 Simmondsia chinensis HOM05D022636 ORTHO05D389257 3.3e-74 281.6 136 100.0
Sc06g0010930 Simmondsia chinensis HOM05D022636 ORTHO05D388020 3.0e-27 125.6 90 67.8
Sc06g0010980 Simmondsia chinensis HOM05D022636 ORTHO05D388429 3.0e-27 125.6 90 67.8
Sc14g0003420 Simmondsia chinensis HOM05D022636 ORTHO05D387562 2.0e-15 86.3 68 63.2
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 9.7e-10 67.4 57 56.1
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 2.2e-09 66.2 67 50.7
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.2e-09 66.2 64 50.0
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.7e-09 65.5 57 57.9
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 3.7e-09 65.5 57 57.9
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 4.8e-09 65.1 67 50.7
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 4.8e-09 65.1 67 49.3
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 4.8e-09 65.1 67 49.3
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 4.8e-09 65.1 57 56.1
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 6.3e-09 64.7 57 54.4
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 6.3e-09 64.7 57 54.4
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 1.1e-08 63.9 67 47.8
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.1e-08 63.9 67 47.8
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.1e-08 63.9 67 47.8
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.4e-08 63.5 67 47.8
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 1.4e-08 63.5 67 47.8
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.4e-08 63.5 57 54.4
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 1.4e-08 63.5 57 52.6
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 1.4e-08 63.5 57 54.4
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 1.8e-08 63.2 57 52.6
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 1.8e-08 63.2 57 52.6
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 46.3
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 46.3
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 49.3
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 49.3
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.4e-08 62.8 62 46.8
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 49.3
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 2.4e-08 62.8 67 46.3
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 3.1e-08 62.4 57 52.6
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 4.1e-08 62.0 57 52.6
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 4.1e-08 62.0 57 52.6
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 4.1e-08 62.0 65 49.2
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 5.3e-08 61.6 57 52.6
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 5.3e-08 61.6 57 52.6
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 5.3e-08 61.6 57 52.6
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 5.3e-08 61.6 57 52.6
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 7.0e-08 61.2 67 46.3
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 7.0e-08 61.2 65 49.2
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 7.0e-08 61.2 57 52.6
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 7.0e-08 61.2 57 52.6
Sc06g0010690 Simmondsia chinensis HOM05D003564 ORTHO05D389581 7.0e-08 61.2 62 53.2
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 7.0e-08 61.2 57 52.6
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 7.0e-08 61.2 57 52.6
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 7.0e-08 61.2 67 49.3
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 52.6
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 52.6
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 52.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 54.4
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 9.1e-08 60.8 67 49.3
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 50.9
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 9.1e-08 60.8 57 50.9
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 1.2e-07 60.5 57 50.9
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 1.2e-07 60.5 67 46.3
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 1.2e-07 60.5 67 46.3
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.2e-07 60.5 57 52.6
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.2e-07 60.5 57 52.6
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.2e-07 60.5 57 50.9
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.2e-07 60.5 67 47.8
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 1.2e-07 60.5 57 50.9
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 1.5e-07 60.1 57 49.1
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 1.5e-07 60.1 57 50.9
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.5e-07 60.1 57 50.9
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 1.5e-07 60.1 67 47.8
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.5e-07 60.1 57 50.9
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 2.0e-07 59.7 57 49.1
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.0e-07 59.7 67 44.8
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 2.0e-07 59.7 57 50.9
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 2.0e-07 59.7 67 47.8
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 2.0e-07 59.7 57 49.1
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 2.0e-07 59.7 57 50.9
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 2.6e-07 59.3 67 49.3
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 2.6e-07 59.3 57 47.4
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 3.4e-07 58.9 57 50.9
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.4e-07 58.9 57 50.9
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 4.5e-07 58.5 57 50.9
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 4.5e-07 58.5 57 49.1
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 4.5e-07 58.5 57 52.6
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 4.5e-07 58.5 57 50.9
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 4.5e-07 58.5 67 44.8
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 5.9e-07 58.2 57 52.6
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 5.9e-07 58.2 57 49.1
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 5.9e-07 58.2 67 46.3
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 5.9e-07 58.2 67 47.8
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 5.9e-07 58.2 67 44.8
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 7.7e-07 57.8 57 49.1
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 7.7e-07 57.8 57 49.1
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 1.0e-06 57.4 57 47.4
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.0e-06 57.4 57 49.1
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.3e-06 57.0 57 47.4
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.3e-06 57.0 57 47.4
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 1.3e-06 57.0 68 47.1
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.3e-06 57.0 57 49.1
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.2e-06 56.2 51 52.9
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.2e-06 56.2 67 40.3
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.2e-06 56.2 57 47.4
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.2e-06 56.2 57 47.4
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.2e-06 56.2 64 46.9
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 2.2e-06 56.2 57 47.4
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 2.2e-06 56.2 57 50.9
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 2.9e-06 55.8 56 50.0
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 2.9e-06 55.8 67 44.8
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 2.9e-06 55.8 67 46.3
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 3.8e-06 55.5 54 51.9
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 3.8e-06 55.5 57 49.1
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 5.0e-06 55.1 57 47.4
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 5.0e-06 55.1 57 45.6
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 5.0e-06 55.1 57 45.6
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 6.5e-06 54.7 67 43.3
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 6.5e-06 54.7 57 45.6
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 8.5e-06 54.3 57 47.4
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 8.5e-06 54.3 57 45.6
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 8.5e-06 54.3 57 47.4
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 8.5e-06 54.3 57 47.4


User provided reference genes

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