Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 2.6e-95 352.1 180 100.0
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 3.9e-59 231.9 184 66.8
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 5.1e-59 231.5 190 65.3
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 9.7e-58 227.3 188 64.9
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 8.2e-57 224.2 178 68.0
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 8.2e-57 224.2 196 65.3
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 1.4e-56 223.4 184 67.4
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 4.1e-56 221.9 192 63.5
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.0e-55 219.5 189 64.0
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 3.4e-55 218.8 192 65.1
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 7.7e-55 217.6 187 62.6
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 1.7e-54 216.5 188 63.8
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 5.0e-54 214.9 193 63.7
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 5.0e-54 214.9 188 63.3
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 5.0e-54 214.9 188 63.3
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 1.1e-53 213.8 191 58.6
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 1.4e-53 213.4 191 60.7
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.4e-53 213.4 193 61.1
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 2.5e-53 212.6 196 58.7
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 2.5e-53 212.6 193 61.1
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 3.2e-53 212.2 192 60.4
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 5.5e-53 211.5 187 63.1
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 7.2e-53 211.1 186 59.7
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 1.6e-52 209.9 193 58.0
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 2.1e-52 209.5 193 59.1
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 3.6e-52 208.8 187 58.8
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 3.6e-52 208.8 193 60.6
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 6.1e-52 208.0 191 61.3
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 1.0e-51 207.2 191 60.2
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 3.0e-51 205.7 187 57.8
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 5.2e-51 204.9 171 60.2
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 8.8e-51 204.1 199 57.8
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 1.5e-50 203.4 197 59.4
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 1.5e-50 203.4 198 57.6
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 1.5e-50 203.4 190 55.3
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 1.5e-50 203.4 192 58.9
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 2.6e-50 202.6 198 57.6
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.6e-50 202.6 195 57.9
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 3.3e-50 202.2 198 57.6
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 3.3e-50 202.2 194 58.2
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 5.7e-50 201.4 192 60.4
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 5.7e-50 201.4 193 57.0
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 9.7e-50 200.7 199 57.8
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 9.7e-50 200.7 169 60.4
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 9.7e-50 200.7 202 57.4
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 2.8e-49 199.1 200 57.5
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 2.8e-49 199.1 191 56.5
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 3.7e-49 198.7 204 57.4
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 6.3e-49 198.0 195 58.5
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 8.2e-49 197.6 179 58.1
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 8.2e-49 197.6 190 58.9
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 8.2e-49 197.6 199 57.3
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 1.4e-48 196.8 199 56.3
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 1.8e-48 196.4 181 58.6
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 3.1e-48 195.7 195 56.4
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 5.3e-48 194.9 200 55.5
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 1.6e-47 193.4 189 58.2
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 2.6e-47 192.6 178 59.6
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 3.5e-47 192.2 200 54.5
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 4.5e-47 191.8 198 55.1
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 1.7e-46 189.9 200 54.5
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 1.7e-46 189.9 192 55.2
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 2.9e-46 189.1 190 56.3
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 2.9e-46 189.1 179 54.2
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 3.8e-46 188.7 177 57.6
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 5.0e-46 188.3 186 55.9
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 5.0e-46 188.3 192 54.7
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 8.5e-46 187.6 175 60.0
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 8.5e-46 187.6 190 56.8
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 1.5e-45 186.8 197 54.3
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 1.5e-45 186.8 197 54.3
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 1.5e-45 186.8 197 54.3
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 1.5e-45 186.8 197 54.3
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 1.9e-45 186.4 191 53.9
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 3.2e-45 185.7 197 53.8
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 3.2e-45 185.7 178 55.6
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 4.2e-45 185.3 191 53.9
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 5.5e-45 184.9 200 53.0
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 5.5e-45 184.9 194 55.7
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 7.2e-45 184.5 197 53.8
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 7.2e-45 184.5 190 54.2
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 9.4e-45 184.1 203 53.2
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 9.4e-45 184.1 197 50.8
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 1.6e-44 183.3 201 52.2
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 2.1e-44 183.0 197 53.8
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 2.1e-44 183.0 197 52.8
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 3.6e-44 182.2 202 53.0
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 3.6e-44 182.2 197 53.3
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 3.6e-44 182.2 190 54.7
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 4.7e-44 181.8 190 55.8
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 6.1e-44 181.4 200 52.5
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.3e-43 179.5 187 52.4
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 5.2e-43 178.3 177 50.8
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 8.8e-43 177.6 187 51.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.6e-42 176.0 138 65.9
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 3.3e-42 175.6 191 53.4
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 4.4e-42 175.3 194 50.5
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.3e-41 173.7 183 54.1
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 1.7e-41 173.3 145 59.3
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 9.1e-40 167.5 149 55.0
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 5.9e-39 164.9 144 57.6
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 1.1e-32 144.1 161 46.6
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 7.2e-29 131.3 171 46.8
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.8e-25 119.4 225 39.1
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 1.3e-22 110.5 87 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 3.4e-18 95.9 144 35.4
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 9.8e-18 94.4 141 34.0
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 1.2e-15 87.4 155 32.9
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 4.6e-15 85.5 148 31.1
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 1.3e-14 84.0 145 33.1
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 3.0e-14 82.8 136 33.8
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 6.6e-14 81.6 116 47.4
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 2.8e-12 76.3 111 46.8
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 6.2e-12 75.1 136 32.4
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 7.5e-10 68.2 81 46.9
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 2.9e-09 66.2 75 41.3


User provided reference genes

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