Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 3.8e-100 368.2 196 100.0
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-93 346.7 196 93.4
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.3e-89 332.4 196 88.8
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.0e-89 332.0 196 89.3
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.0e-89 332.0 196 88.3
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 6.8e-89 330.9 196 86.7
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 8.9e-89 330.5 196 86.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 8.9e-89 330.5 196 88.8
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.2e-88 330.1 196 87.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.6e-88 328.9 196 88.8
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.4e-88 328.6 196 87.8
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.4e-88 328.6 196 86.7
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.4e-88 328.6 196 89.3
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.7e-87 326.2 196 87.8
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.7e-87 326.2 196 87.2
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 3.7e-87 325.1 196 86.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 6.3e-87 324.3 196 87.8
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 8.3e-87 323.9 196 85.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 8.3e-87 323.9 196 87.2
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.1e-86 323.6 195 85.6
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.1e-86 321.6 196 85.7
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 7.0e-86 320.9 196 84.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.2e-85 320.1 196 85.7
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 2.7e-85 318.9 196 84.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 4.5e-85 318.2 196 85.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 7.8e-85 317.4 196 84.7
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 7.8e-85 317.4 196 83.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 7.8e-85 317.4 196 82.7
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 84.2
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 84.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 83.2
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 85.7
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 82.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 83.2
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 2.9e-84 315.5 196 84.7
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 82.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 6.6e-84 314.3 196 85.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 6.6e-84 314.3 196 82.1
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 6.6e-84 314.3 196 83.7
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 6.6e-84 314.3 196 83.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.1e-83 313.5 196 82.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-83 313.2 196 85.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-83 313.2 196 85.2
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.3e-83 311.6 196 83.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 5.6e-83 311.2 196 81.6
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 7.3e-83 310.8 196 83.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 9.5e-83 310.5 181 90.1
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 9.5e-83 310.5 196 83.2
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.2e-82 310.1 196 83.2
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.2e-82 310.1 196 82.1
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.8e-82 308.9 196 82.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.8e-82 308.9 196 81.1
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.8e-82 308.9 196 83.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.8e-82 308.9 196 81.1
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.6e-82 308.5 196 84.2
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 8.0e-82 307.4 196 83.2
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.8e-81 306.2 196 81.1
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.8e-81 306.2 196 81.1
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.3e-81 305.8 196 80.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 4.0e-81 305.1 196 80.6
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.0e-80 302.8 196 81.6
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.4e-80 302.0 197 80.7
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.4e-80 301.6 237 71.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 4.4e-80 301.6 197 79.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.8e-80 301.2 196 81.1
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 5.8e-80 301.2 175 88.6
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 5.8e-80 301.2 196 80.6
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 5.8e-80 301.2 196 81.1
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.3e-79 300.1 197 79.7
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.3e-79 300.1 196 80.6
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 2.2e-79 299.3 196 79.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.9e-79 298.1 196 80.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 4.9e-79 298.1 196 78.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.4e-79 297.7 196 79.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 6.4e-79 297.7 196 80.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.1e-78 297.0 196 79.6
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.4e-78 296.6 196 79.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 7.0e-78 294.3 197 77.7
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.2e-78 293.9 196 79.1
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 9.2e-78 293.9 196 78.1
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.6e-77 293.1 197 78.7
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.6e-77 293.1 196 80.1
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 3.5e-77 292.0 196 78.6
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 4.6e-77 291.6 197 78.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 6.0e-77 291.2 196 76.0
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.8e-77 290.8 196 77.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.0e-76 290.4 196 78.1
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.0e-76 290.4 196 78.1
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.3e-76 290.0 196 76.5
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-76 289.3 175 86.3
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.3e-76 289.3 196 76.5
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 6.6e-76 287.7 196 77.0
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.5e-75 286.6 196 74.0
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.5e-75 286.6 196 74.0
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.3e-75 285.4 248 64.9
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 3.3e-75 285.4 197 77.2
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 5.6e-75 284.6 196 74.0
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.3e-75 284.3 175 84.6
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 7.3e-75 284.3 196 74.0
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 9.5e-75 283.9 196 73.5
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-74 283.5 196 75.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.6e-74 283.1 195 73.3
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 2.1e-74 282.7 196 72.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.8e-74 282.3 196 73.0
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.8e-74 282.3 196 76.0
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.7e-74 281.6 196 73.5
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 4.7e-74 281.6 196 73.5
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 4.7e-74 281.6 196 73.5
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 8.0e-74 280.8 178 82.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 8.0e-74 280.8 196 73.5
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 8.0e-74 280.8 197 75.1
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 73.0
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 73.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 73.0
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 73.0
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.3e-73 279.3 196 73.5
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 4.0e-73 278.5 196 73.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 5.2e-73 278.1 196 72.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 8.9e-73 277.3 196 73.0
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 2.0e-72 276.2 196 76.0
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.0e-72 276.2 196 71.4
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 7.5e-72 274.2 196 75.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.9e-71 271.6 196 74.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 4.9e-71 271.6 196 74.0
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.1e-70 270.4 245 62.0
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.4e-70 270.0 175 79.4
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.1e-70 268.5 211 71.1
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.2e-69 266.9 211 70.6
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 4.7e-66 255.0 188 71.3
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.4e-62 241.5 196 69.4
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.6e-60 234.6 175 75.4
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.9e-55 219.2 134 82.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.8e-55 218.8 197 61.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 4.9e-55 218.4 155 75.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.2e-53 213.8 134 78.4
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-49 200.7 155 66.5
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.7e-45 186.0 178 59.0
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.0e-41 172.2 149 63.8
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.4e-40 169.1 112 77.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 9.0e-33 144.4 196 42.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.1e-30 137.5 183 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 2.7e-29 132.9 196 37.8
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.7e-29 132.9 135 59.3
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.7e-26 122.5 85 71.8
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 8.2e-26 121.3 196 37.8
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.1e-25 120.9 156 48.1
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.4e-25 119.8 236 39.4
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 8.7e-20 101.3 192 34.4
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.5e-19 100.5 190 33.2
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 4.8e-18 95.5 63 81.0
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.3e-15 87.4 156 44.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 7.2e-14 81.6 48 85.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 2.7e-13 79.7 53 75.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 6.1e-13 78.6 64 68.8
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 6.7e-12 75.1 52 71.2
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.2e-07 60.1 41 78.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.9e-07 59.7 40 80.0
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 9.4e-06 54.7 92 42.4


User provided reference genes

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