Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 2.8e-101 372.9 357 100.0
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.7e-61 240.7 338 59.2
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 3.7e-61 239.6 339 56.3
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 1.1e-60 238.0 337 78.3
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 2.3e-58 230.3 338 85.2
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.5e-57 227.6 342 52.0
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 3.3e-57 226.5 338 78.4
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.2e-56 224.6 339 77.0
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 4.7e-56 222.6 337 77.2
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 2.6e-54 216.9 335 49.0
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 2.6e-54 216.9 338 76.6
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 4.4e-54 216.1 338 81.7
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 5.8e-54 215.7 338 82.2
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.1e-52 211.5 338 44.1
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.6e-51 207.6 345 80.6
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 2.7e-51 206.8 338 74.9
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.0e-50 204.9 340 53.8
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.0e-50 204.9 340 62.1
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 3.0e-50 203.4 340 81.5
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.9e-50 203.0 340 57.4
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 5.1e-50 202.6 342 78.4
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 6.6e-50 202.2 345 70.4
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 6.6e-50 202.2 338 74.6
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.5e-49 201.1 341 70.7
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.5e-49 201.1 341 70.7
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 1.9e-49 200.7 341 71.3
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.9e-49 200.7 341 71.6
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 3.3e-49 199.9 338 79.0
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 7.3e-49 198.7 341 71.6
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 9.6e-49 198.4 341 64.8
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 9.6e-49 198.4 338 73.1
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 1.2e-48 198.0 338 72.8
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.2e-48 198.0 330 49.4
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 2.1e-48 197.2 342 71.1
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.8e-48 196.8 336 42.9
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.8e-48 196.8 338 79.9
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 2.8e-48 196.8 338 79.9
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 3.6e-48 196.4 341 71.3
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 3.6e-48 196.4 338 80.8
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 3.6e-48 196.4 340 59.7
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 4.7e-48 196.1 381 66.9
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 6.2e-48 195.7 338 80.2
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-47 194.9 336 42.6
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 1.4e-47 194.5 338 72.5
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.8e-47 194.1 338 79.0
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 4.0e-47 193.0 338 63.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 5.2e-47 192.6 341 67.4
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 9.0e-47 191.8 338 73.4
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.2e-46 191.4 338 49.4
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.2e-46 191.4 343 65.0
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 1.5e-46 191.0 338 77.8
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 1.5e-46 191.0 341 71.0
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.0e-46 190.7 338 79.9
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 2.6e-46 190.3 338 74.3
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 3.4e-46 189.9 338 79.6
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 4.4e-46 189.5 338 79.3
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 9.9e-46 188.3 338 43.5
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 9.9e-46 188.3 337 36.5
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.3e-45 188.0 338 72.5
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 2.2e-45 187.2 338 71.6
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 2.9e-45 186.8 338 74.3
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 6.4e-45 185.7 341 47.8
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 8.4e-45 185.3 342 65.5
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 8.4e-45 185.3 351 51.0
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 8.4e-45 185.3 338 78.4
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.1e-44 184.9 347 64.3
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 1.4e-44 184.5 335 69.3
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 1.4e-44 184.5 351 61.0
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.2e-44 183.3 348 69.8
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 3.2e-44 183.3 337 72.1
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 4.2e-44 183.0 338 73.1
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 4.2e-44 183.0 341 69.8
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 5.4e-44 182.6 352 62.2
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.4e-44 182.6 335 34.9
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 1.6e-43 181.0 338 71.9
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.6e-43 181.0 339 70.8
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 2.7e-43 180.3 365 44.4
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 3.5e-43 179.9 365 60.0
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 3.5e-43 179.9 338 78.1
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.5e-43 179.9 338 78.7
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 4.6e-43 179.5 340 69.7
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 4.6e-43 179.5 341 68.6
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 6.0e-43 179.1 337 71.8
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.0e-42 178.3 339 71.4
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.3e-42 177.9 337 71.5
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-42 177.9 337 71.5
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-42 177.9 337 71.5
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 1.3e-42 177.9 339 72.0
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 1.7e-42 177.6 337 39.5
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.0e-42 176.8 337 71.2
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 8.7e-42 175.3 338 71.6
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.9e-41 174.1 338 68.0
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 2.5e-41 173.7 339 71.4
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 3.3e-41 173.3 345 67.2
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 7.3e-41 172.2 345 40.6
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.3e-40 171.4 342 64.3
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 4.8e-40 169.5 337 59.6
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.1e-40 168.7 345 40.0
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 2.4e-39 167.2 344 77.0
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.1e-39 166.8 330 40.6
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 4.0e-39 166.4 342 55.8
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 6.9e-39 165.6 345 42.9
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 6.9e-39 165.6 345 42.6
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 7.6e-38 162.2 371 57.7
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.7e-37 161.0 334 46.4
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 2.9e-37 160.2 342 38.9
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.4e-37 158.7 345 43.2
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.9e-36 157.5 344 75.9
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.4e-36 157.1 339 32.7
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 7.1e-36 155.6 345 46.4
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.1e-35 154.1 338 70.4
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 2.7e-35 153.7 337 69.4
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.9e-33 147.5 364 35.4
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.5e-33 147.1 342 39.2
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 7.4e-33 145.6 333 39.3
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 3.7e-32 143.3 342 67.3
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 6.2e-32 142.5 336 39.9
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 6.2e-32 142.5 334 71.0
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 1.8e-31 141.0 345 64.1
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.8e-31 141.0 345 36.2
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 3.1e-31 140.2 329 37.1
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.9e-31 139.0 263 58.6
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.6e-30 137.1 264 78.0
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 2.9e-29 133.7 337 59.6
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.2e-28 130.2 339 27.7
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.2e-27 128.3 337 72.1
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 2.1e-27 127.5 231 34.6
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 3.5e-27 126.7 356 42.4
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.6e-27 126.3 316 36.1
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 3.0e-26 123.6 334 65.0
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 6.7e-26 122.5 231 84.8
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 1.1e-25 121.7 231 84.4
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.5e-25 120.6 317 29.7
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 7.4e-25 119.0 337 26.4
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 7.4e-25 119.0 338 65.1
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 2.8e-24 117.1 234 78.6
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.4e-23 114.8 173 37.6
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 4.0e-23 113.2 60 81.7
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 4.0e-23 113.2 322 60.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.2e-22 111.7 60 80.0
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.6e-22 110.5 64 73.4
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 3.4e-22 110.2 335 33.7
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 7.6e-22 109.0 428 57.9
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.3e-21 108.2 62 77.4
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 1.7e-21 107.8 213 32.4
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.9e-21 107.1 64 71.9
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.5e-20 104.0 64 67.2
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 3.2e-20 103.6 60 75.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 1.2e-19 101.7 123 42.3
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 2.1e-19 100.9 53 81.1
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 6.0e-19 99.4 335 25.4
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.3e-18 98.2 73 63.0
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 1.6e-16 91.3 344 58.7
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 3.7e-16 90.1 59 66.1
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 4.1e-15 86.7 65 63.1
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.0e-14 84.3 341 37.0
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.6e-14 84.0 345 26.7
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 5.9e-14 82.8 56 66.1
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 2.2e-13 80.9 121 38.8
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 5.5e-12 76.3 47 72.3
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 1.2e-11 75.1 42 76.2
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.7e-11 73.9 47 70.2
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.9e-11 72.4 133 33.1
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 1.0e-10 72.0 113 39.8
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 3.0e-10 70.5 125 46.4
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 8.8e-10 68.9 339 23.3
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 3.3e-09 67.0 105 40.0
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 7.4e-09 65.9 130 30.0
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 4.8e-08 63.2 57 49.1
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 7.7e-06 55.8 30 73.3


User provided reference genes

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