Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.8e-69 265.8 132 100.0
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 1.7e-30 136.3 82 81.7
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 1.4e-29 133.3 93 76.3
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 3.1e-29 132.1 120 61.7
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 5.3e-29 131.3 95 74.7
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 5.3e-29 131.3 121 58.7
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 6.9e-29 131.0 95 70.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 9.1e-29 130.6 80 80.0
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 9.1e-29 130.6 80 80.0
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 9.1e-29 130.6 132 57.6
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 1.2e-28 130.2 91 74.7
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 1.2e-28 130.2 82 78.0
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 1.5e-28 129.8 80 78.8
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 2.0e-28 129.4 80 78.8
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 2.0e-28 129.4 90 75.6
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 3.4e-28 128.6 82 80.5
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 3.4e-28 128.6 95 72.6
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 4.5e-28 128.3 89 74.2
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 4.5e-28 128.3 80 81.2
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 7.7e-28 127.5 80 80.0
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 7.7e-28 127.5 80 80.0
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 7.7e-28 127.5 83 78.3
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 7.7e-28 127.5 132 56.8
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 7.7e-28 127.5 83 78.3
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 1.3e-27 126.7 126 56.3
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 1.3e-27 126.7 80 77.5
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.2e-27 125.9 80 77.5
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 2.2e-27 125.9 80 78.8
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 2.2e-27 125.9 82 75.6
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.9e-27 125.6 82 74.4
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 3.8e-27 125.2 80 77.5
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 3.8e-27 125.2 80 77.5
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 3.8e-27 125.2 94 68.1
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 5.0e-27 124.8 88 71.6
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 8.5e-27 124.0 82 75.6
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 1.1e-26 123.6 83 74.7
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.1e-26 123.6 98 61.2
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 1.1e-26 123.6 79 78.5
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 1.1e-26 123.6 102 62.7
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 1.4e-26 123.2 79 78.5
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 1.4e-26 123.2 120 56.7
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.9e-26 122.9 85 70.6
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 3.2e-26 122.1 82 72.0
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 3.2e-26 122.1 82 72.0
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 3.2e-26 122.1 133 53.4
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 3.2e-26 122.1 108 59.3
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 3.2e-26 122.1 102 61.8
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 3.2e-26 122.1 80 73.8
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 5.5e-26 121.3 85 70.6
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 7.2e-26 120.9 80 75.0
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 9.4e-26 120.6 114 57.0
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 2.7e-25 119.0 101 62.4
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 3.6e-25 118.6 99 59.6
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 3.6e-25 118.6 101 61.4
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 3.6e-25 118.6 118 55.9
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 7.9e-25 117.5 88 68.2
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 7.9e-25 117.5 88 68.2
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 5.7e-23 111.3 91 68.1
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.3e-22 110.2 122 54.9
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 6.3e-22 107.8 99 56.6
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.1e-21 107.1 80 62.5
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 3.1e-21 105.5 85 64.7
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 3.1e-21 105.5 79 68.4
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 4.1e-21 105.1 80 68.8
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 5.3e-21 104.8 81 65.4
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.2e-20 103.6 80 67.5
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.2e-20 103.6 80 67.5
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.2e-20 103.6 80 67.5
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.2e-20 103.6 80 67.5
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.2e-20 103.6 80 67.5
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 3.4e-20 102.1 94 56.4
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 4.5e-20 101.7 94 56.4
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 4.5e-20 101.7 80 61.2
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 5.9e-20 101.3 80 66.2
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 5.9e-20 101.3 80 66.2
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 7.7e-20 100.9 80 66.2
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 7.7e-20 100.9 80 66.2
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 1.0e-19 100.5 80 65.0
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 1.0e-19 100.5 80 65.0
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 2.9e-19 99.0 80 67.5
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 3.8e-19 98.6 99 54.5
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 2.5e-18 95.9 67 74.6
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 2.5e-18 95.9 82 57.3
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 9.4e-18 94.0 83 55.4
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.2e-17 93.6 67 68.7
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.2e-17 93.6 67 68.7
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.6e-17 93.2 71 69.0
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.1e-17 92.8 70 70.0
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 1.4e-16 90.1 68 66.2
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 2.3e-16 89.4 74 66.2
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 8.8e-16 87.4 74 59.5
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 2.0e-15 86.3 81 56.8
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.3e-15 85.5 98 53.1
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 3.3e-15 85.5 73 58.9
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 9.7e-15 84.0 90 51.1
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.3e-14 83.6 66 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 2.4e-13 79.3 74 54.1
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 2.4e-13 79.3 92 42.4
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 1.6e-12 76.6 84 50.0
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 2.0e-12 76.3 80 56.2
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 3.8e-11 72.0 71 53.5
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 2.5e-10 69.3 46 69.6
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 3.6e-09 65.5 95 40.0
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 2.6e-07 59.3 121 34.7
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 2.8e-06 55.8 110 39.1
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 3.7e-06 55.5 65 47.7


User provided reference genes

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