Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 8.8e-143 510.8 360 100.0
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 5.4e-68 262.3 376 65.7
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.6e-64 249.6 358 68.2
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 8.4e-61 238.4 350 65.4
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.4e-60 237.7 375 66.7
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 4.6e-59 232.6 329 70.5
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.0e-59 232.3 382 62.3
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 3.0e-58 229.9 375 63.2
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 2.5e-57 226.9 375 61.3
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.1e-56 223.8 383 61.6
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-56 223.8 383 61.6
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-56 223.8 378 61.6
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-56 223.8 380 61.6
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.1e-56 223.8 380 61.1
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 2.8e-56 223.4 347 64.0
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.7e-56 223.0 383 62.1
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 1.1e-55 221.5 392 57.4
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.4e-55 221.1 344 64.0
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.8e-55 220.7 355 62.0
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 4.0e-55 219.5 352 63.4
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 5.3e-55 219.2 367 61.3
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 9.0e-55 218.4 378 57.4
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 3.4e-54 216.5 363 60.1
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 4.5e-54 216.1 353 60.9
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 7.6e-54 215.3 363 60.6
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 7.6e-54 215.3 402 56.5
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.0e-53 214.9 375 60.3
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.3e-53 214.5 374 58.8
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.7e-53 214.2 373 58.4
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.2e-53 213.8 373 58.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.8e-53 213.0 357 61.9
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 3.8e-53 213.0 415 56.1
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 4.9e-53 212.6 341 64.5
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.5e-53 212.2 376 58.5
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 8.4e-53 211.8 405 58.3
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 1.4e-52 211.1 382 60.5
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 4.2e-52 209.5 431 55.9
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 9.3e-52 208.4 348 62.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.1e-51 207.2 327 65.4
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.1e-51 207.2 397 58.4
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.5e-51 206.5 355 60.3
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.0e-50 204.9 424 54.2
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.8e-50 204.1 352 62.2
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.3e-50 203.8 325 65.2
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 3.9e-50 203.0 379 60.2
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 6.7e-50 202.2 406 56.4
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 8.7e-50 201.8 277 74.4
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.1e-49 201.4 390 58.2
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.9e-49 200.7 348 62.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 2.5e-49 200.3 388 57.0
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 2.5e-49 200.3 357 63.0
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 4.3e-49 199.5 373 60.9
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 5.7e-49 199.1 329 66.0
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 9.6e-49 198.4 275 55.3
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 1.3e-48 198.0 357 44.0
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.6e-48 197.6 378 60.3
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.6e-48 197.6 374 60.2
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.1e-48 197.2 410 55.6
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 8.2e-48 195.3 359 59.3
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.0e-46 190.7 368 58.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 4.5e-46 189.5 394 56.6
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 5.9e-46 189.1 375 56.5
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 3.8e-45 186.4 402 55.2
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 5.0e-45 186.0 363 58.1
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 6.5e-45 185.7 426 53.3
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.2e-44 183.0 226 49.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 7.2e-44 182.2 292 68.5
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 9.3e-44 181.8 412 52.7
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.6e-43 181.0 259 73.7
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.6e-43 181.0 412 52.7
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.6e-43 179.5 412 55.1
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.6e-43 179.5 419 53.2
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.6e-43 179.5 400 53.8
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 4.6e-43 179.5 375 58.4
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 6.1e-43 179.1 387 56.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.3e-42 177.9 345 59.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 2.3e-42 177.2 394 52.5
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 3.0e-42 176.8 326 49.7
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 8.7e-42 175.3 385 56.6
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.1e-41 174.9 226 46.5
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.3e-41 173.3 343 60.3
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.2e-40 170.6 278 50.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 6.3e-40 169.1 256 43.4
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 8.2e-40 168.7 235 77.0
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 8.2e-40 168.7 225 46.7
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.8e-39 167.5 224 48.2
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.4e-39 167.2 247 74.9
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 2.0e-38 164.1 337 59.6
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 7.7e-38 162.2 394 52.8
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 6.5e-37 159.1 296 66.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 9.4e-36 155.2 396 53.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.4e-34 151.4 265 43.0
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 2.3e-34 150.6 223 74.9
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 2.5e-33 147.1 379 52.8
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 5.7e-33 146.0 359 55.2
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.2e-32 144.1 223 76.7
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 6.3e-32 142.5 239 50.2
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.4e-31 141.4 291 45.4
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 4.5e-30 136.3 93 69.9
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.7e-29 134.4 264 39.4
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 4.2e-28 129.8 195 40.5
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 2.6e-25 120.6 369 52.3
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 4.4e-25 119.8 189 84.1
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 5.0e-21 106.3 88 58.0
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.1e-19 100.9 180 80.6
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 2.6e-17 94.0 189 75.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 4.8e-16 89.7 99 77.8
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 9.1e-15 85.5 233 60.5
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.2e-11 75.1 227 60.8
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 8.0e-11 72.4 283 26.9
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.0e-10 72.0 84 39.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.6e-09 67.4 144 31.9
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.7e-08 64.7 93 31.2
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 2.4e-07 60.8 85 40.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 2.0e-06 57.8 74 35.1


User provided reference genes

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