Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 5.0e-125 451.1 218 100.0
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 5.6e-108 394.4 221 84.2
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 9.5e-108 393.7 221 83.3
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.7e-107 391.3 221 82.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 8.0e-107 390.6 221 82.8
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 4.0e-106 388.3 221 83.3
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 5.2e-106 387.9 221 83.7
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 5.2e-106 387.9 221 82.4
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 6.8e-106 387.5 221 82.8
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 8.9e-106 387.1 221 83.3
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.2e-105 386.7 220 80.5
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.5e-105 386.3 221 82.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.5e-105 386.3 221 82.4
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.5e-105 386.3 221 82.8
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.0e-105 386.0 220 81.8
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.6e-105 385.6 221 81.4
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.7e-105 384.4 221 80.1
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.7e-105 384.4 221 82.4
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.7e-105 384.4 221 82.4
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 7.5e-105 384.0 221 81.9
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 9.8e-105 383.6 221 81.9
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 2.2e-104 382.5 220 80.5
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.7e-104 381.7 231 80.1
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 4.9e-104 381.3 221 80.1
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.4e-103 379.8 220 78.6
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.2e-103 378.6 221 79.2
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 4.1e-103 378.3 221 80.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.4e-103 377.9 221 79.6
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 9.2e-103 377.1 221 79.2
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.0e-102 375.9 221 79.2
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.7e-102 375.6 221 79.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 3.5e-102 375.2 249 73.5
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 4.6e-102 374.8 221 80.1
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.6e-102 374.8 221 78.3
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.6e-102 374.8 221 78.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 3.0e-101 372.1 221 79.2
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 5.0e-101 371.3 220 78.2
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 5.0e-101 371.3 221 79.2
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 5.0e-101 371.3 238 76.9
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 6.6e-101 370.9 220 77.7
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.1e-100 370.2 220 78.6
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.9e-100 369.4 219 78.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.5e-100 369.0 221 78.3
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.3e-100 368.2 222 77.5
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 7.3e-100 367.5 226 76.5
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 7.3e-100 367.5 221 79.2
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 9.5e-100 367.1 221 78.3
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.6e-99 366.3 221 78.3
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 2.1e-99 365.9 219 79.0
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 4.7e-99 364.8 221 77.8
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 1.4e-98 363.2 221 78.3
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.4e-98 363.2 221 79.2
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.8e-98 362.8 219 78.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.8e-98 362.8 219 76.7
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.3e-98 362.5 221 76.5
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 3.1e-98 362.1 221 77.4
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.1e-98 362.1 221 76.5
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 4.0e-98 361.7 221 77.4
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.5e-97 359.8 221 76.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.0e-97 359.4 222 76.1
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.6e-97 359.0 221 76.0
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 3.4e-97 358.6 221 77.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 3.4e-97 358.6 220 76.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 4.4e-97 358.2 221 76.5
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 9.8e-97 357.1 218 78.4
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.3e-96 356.7 221 76.0
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 3.7e-96 355.1 221 76.0
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 6.4e-96 354.4 221 75.6
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 6.4e-96 354.4 221 75.1
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 6.4e-96 354.4 221 75.1
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 8.3e-96 354.0 220 75.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.1e-95 353.6 221 75.1
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.9e-95 352.8 220 73.2
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.4e-95 352.4 214 79.0
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.2e-95 352.1 220 74.5
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 4.1e-95 351.7 220 74.1
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 7.0e-95 350.9 221 75.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.2e-94 350.1 221 74.7
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.0e-94 349.4 221 73.3
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.0e-93 347.1 221 74.7
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.7e-93 346.3 234 73.1
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 5.0e-93 344.7 220 72.3
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 6.6e-93 344.4 251 67.3
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 6.6e-93 344.4 221 69.7
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.1e-92 343.6 218 74.8
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.6e-91 338.6 220 74.1
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 5.2e-90 334.7 201 77.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.2e-88 329.3 247 65.2
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 4.1e-87 325.1 218 70.2
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.3e-85 320.1 181 82.9
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 2.3e-85 319.3 244 64.8
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 7.3e-84 314.3 182 79.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.8e-82 309.7 220 65.0
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.0e-82 308.5 220 65.0
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 6.8e-82 307.8 203 71.4
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 6.8e-82 307.8 203 71.4
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 8.9e-82 307.4 183 79.8
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 8.9e-82 307.4 221 64.7
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 7.6e-81 304.3 221 69.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.2e-80 302.8 221 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 6.4e-80 301.2 222 63.5
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 6.4e-80 301.2 183 78.7
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 8.4e-80 300.8 174 82.8
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.1e-79 300.4 221 67.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.9e-79 299.7 199 70.4
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 5.4e-79 298.1 165 82.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.2e-78 297.0 202 68.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.0e-77 293.9 219 64.8
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 3.0e-77 292.4 221 64.7
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.6e-77 291.2 179 77.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 2.5e-76 289.3 220 63.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 9.6e-68 260.8 163 76.7
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.3e-66 255.0 228 61.4
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 6.4e-64 248.1 185 67.0
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 4.6e-62 241.9 220 57.3
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 9.6e-52 207.6 312 40.4
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 8.1e-51 204.5 261 42.1
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.6e-49 198.0 116 81.9
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.9e-47 193.4 199 53.3
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.9e-45 185.7 256 42.2
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.7e-43 179.1 113 77.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 6.3e-43 178.3 108 73.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.6e-41 172.9 107 72.0
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.5e-40 167.9 119 69.7
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.4e-34 149.8 116 62.1
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 4.2e-31 139.0 125 60.8
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.6e-28 129.8 77 80.5
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 2.6e-28 129.8 78 78.2
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.3e-28 129.4 193 38.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.7e-27 125.9 72 77.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 3.6e-22 109.4 81 64.2
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.2e-17 94.4 74 60.8
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.9e-15 87.0 56 67.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 9.1e-10 68.2 66 51.5


User provided reference genes

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