Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.7e-129 463.4 217 100.0
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.3e-55 217.6 167 61.1
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-53 212.6 151 60.9
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.5e-46 189.1 167 51.5
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-46 188.0 164 56.1
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.2e-43 178.3 167 52.1
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-31 138.7 150 48.0
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-31 138.7 150 48.0
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.1e-31 138.3 169 42.6
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-30 137.1 169 42.6
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.0e-29 134.4 169 40.8
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-29 134.0 158 48.1
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.1e-29 132.1 191 41.4
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-28 129.4 145 44.8
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-28 129.4 176 43.8
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-28 129.0 173 42.8
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-27 126.7 148 47.3
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-26 124.4 134 47.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-26 124.0 145 44.8
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-26 124.0 144 46.5
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-26 122.9 148 41.9
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-25 120.9 92 58.7
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.0e-25 120.2 174 42.5
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.4e-25 119.4 166 40.4
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 3.4e-25 119.4 168 39.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 5.9e-25 118.6 152 40.1
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.9e-25 118.6 144 45.1
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-24 117.5 169 40.2
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-24 117.1 160 40.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.2e-24 116.7 168 39.9
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.9e-24 116.3 170 38.2
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.9e-24 116.3 168 39.9
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.0e-24 115.5 149 43.6
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-23 114.4 120 43.3
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-23 114.0 143 43.4
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.5e-23 113.2 154 38.3
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.2e-23 112.8 157 38.2
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.2e-23 112.5 172 39.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.2e-23 112.5 173 39.3
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 4.2e-23 112.5 170 37.1
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 4.6e-22 109.0 140 42.1
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.9e-22 108.2 170 37.6
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.0e-21 107.8 130 42.3
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 8.7e-21 104.8 169 39.6
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.5e-20 104.0 172 37.2
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-20 102.8 60 73.3
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.6e-19 100.5 173 33.5
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.2e-19 100.1 169 37.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.7e-19 99.4 134 38.8
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 6.3e-19 98.6 173 37.0
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 6.3e-19 98.6 122 39.3
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 8.2e-19 98.2 182 33.5
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.8e-18 97.1 135 35.6
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.1e-18 96.3 154 35.1
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.1e-18 95.9 168 34.5
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.9e-18 95.1 146 35.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 9.1e-18 94.7 147 39.5
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-17 94.4 117 40.2
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.5e-17 94.0 146 35.6
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 1.5e-17 94.0 146 35.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-17 94.0 161 37.9
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-17 94.0 161 37.9
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.6e-17 93.2 143 37.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.6e-17 93.2 143 37.1
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 3.4e-17 92.8 135 36.3
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 4.5e-17 92.4 156 33.3
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.5e-17 92.4 96 45.8
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 4.5e-17 92.4 143 39.2
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.9e-17 92.0 134 35.8
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 7.7e-17 91.7 117 37.6
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-16 91.3 163 32.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-16 91.3 102 43.1
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-16 91.3 102 43.1
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.0e-16 91.3 117 38.5
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 5.0e-16 89.0 130 38.5
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-16 88.6 78 48.7
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-16 88.6 150 34.0
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-15 87.4 79 50.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-15 87.4 79 50.6
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-15 87.0 80 48.8
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.5e-15 86.7 149 30.2
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-15 86.7 150 33.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.2e-15 86.3 96 42.7
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 3.2e-15 86.3 94 43.6
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 4.2e-15 85.9 99 43.4
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.2e-15 85.9 99 43.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-14 84.0 112 41.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.1e-14 83.6 98 41.8
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.7e-14 83.2 111 41.4
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.7e-14 83.2 79 48.1
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.6e-14 82.8 96 42.7
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-14 82.8 94 42.6
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-14 82.8 94 42.6
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 6.1e-14 82.0 155 30.3
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 1.0e-13 81.3 149 28.2
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.0e-13 81.3 129 33.3
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-13 80.9 94 41.5
Sc16g0002950 Simmondsia chinensis HOM05D045094 ORTHO05D005949 1.8e-13 80.5 48 79.2
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.9e-13 79.3 133 34.6
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 8.8e-13 78.2 136 28.7
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.1e-12 77.8 149 30.9
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.6e-12 76.6 127 31.5
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 7.4e-12 75.1 147 29.3
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.3e-11 74.3 124 38.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 6.3e-11 72.0 149 29.5
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.1e-10 71.2 92 39.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.8e-10 70.5 154 35.1
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.8e-10 70.5 69 44.9
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 4.1e-10 69.3 85 40.0
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.1e-10 68.2 81 40.7
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.1e-10 68.2 153 28.8
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.1e-10 68.2 153 28.8
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-09 67.8 145 31.7
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-09 67.8 123 35.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.5e-09 65.9 148 29.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-08 63.9 148 28.4
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.7e-08 63.9 95 32.6
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 2.2e-08 63.5 100 36.0
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.9e-08 63.2 109 33.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.0e-08 62.4 129 32.6
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 6.5e-08 62.0 94 36.2
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 6.5e-08 62.0 94 36.2
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-08 62.0 92 40.2
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.5e-07 60.1 119 31.1
EL10Ac1g00654 Beta vulgaris HOM05D009434 ORTHO05D011504 7.2e-07 58.5 115 34.8
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 9.4e-07 58.2 116 29.3
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.2e-06 57.8 113 33.6


User provided reference genes

Program Settings