Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 2.6e-95 352.1 177 100.0
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 2.4e-32 142.9 164 52.4
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 2.0e-31 139.8 151 53.6
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 9.9e-31 137.5 143 58.0
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.2e-30 136.3 142 54.2
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.1e-29 134.0 143 57.3
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 4.2e-29 132.1 169 48.5
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 7.1e-29 131.3 153 54.2
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 2.1e-28 129.8 164 50.6
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 2.1e-28 129.8 144 54.2
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 4.6e-28 128.6 181 43.6
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 7.9e-28 127.9 146 54.1
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 1.0e-27 127.5 156 54.5
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.3e-27 126.3 155 49.0
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 6.7e-27 124.8 153 52.9
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 1.5e-26 123.6 143 53.8
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.5e-26 123.6 145 51.7
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 1.9e-26 123.2 139 51.1
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.5e-26 122.9 132 54.5
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 4.3e-26 122.1 151 49.0
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 4.3e-26 122.1 145 48.3
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 5.6e-26 121.7 149 49.0
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 5.6e-26 121.7 154 50.0
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 7.4e-26 121.3 137 49.6
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 1.3e-25 120.6 150 51.3
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 1.6e-25 120.2 157 51.0
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.6e-25 120.2 157 47.8
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.6e-25 120.2 134 50.0
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.6e-25 120.2 154 49.4
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 2.1e-25 119.8 158 45.6
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 2.8e-25 119.4 162 48.1
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 3.7e-25 119.0 167 45.5
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 4.8e-25 118.6 143 50.3
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 4.8e-25 118.6 145 56.6
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 6.2e-25 118.2 146 50.7
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.1e-24 117.5 144 50.7
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.1e-24 117.5 144 50.7
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 1.4e-24 117.1 149 47.0
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.8e-24 116.7 150 49.3
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 4.0e-24 115.5 135 51.1
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 4.0e-24 115.5 146 49.3
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 5.3e-24 115.2 151 48.3
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 9.0e-24 114.4 149 47.0
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 9.0e-24 114.4 144 50.7
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 1.2e-23 114.0 163 46.0
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.5e-23 113.6 150 49.3
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 2.0e-23 113.2 146 50.0
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.6e-23 112.8 162 49.4
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 3.4e-23 112.5 162 48.8
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 3.4e-23 112.5 170 44.1
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 3.4e-23 112.5 149 51.0
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 3.4e-23 112.5 143 49.0
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 4.5e-23 112.1 167 50.9
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 5.8e-23 111.7 146 52.1
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 7.6e-23 111.3 143 47.6
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 7.6e-23 111.3 149 45.0
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 7.6e-23 111.3 166 49.4
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 1.0e-22 110.9 157 47.1
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.7e-22 110.2 143 48.3
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 2.9e-22 109.4 143 48.3
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 3.8e-22 109.0 146 50.0
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 6.5e-22 108.2 162 46.3
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 1.1e-21 107.5 151 46.4
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.4e-21 107.1 173 43.4
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 2.5e-21 106.3 151 47.7
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 5.5e-21 105.1 132 47.0
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 5.5e-21 105.1 118 51.7
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.6e-20 103.6 109 51.4
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 4.6e-20 102.1 143 48.3
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 4.6e-20 102.1 149 45.0
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 4.6e-20 102.1 137 44.5
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 6.0e-20 101.7 98 58.2
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 1.3e-19 100.5 145 45.5
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 3.0e-19 99.4 143 44.1
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 9.6e-18 94.4 135 45.2
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 2.1e-17 93.2 243 34.2
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 1.1e-16 90.9 130 47.7
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 1.8e-16 90.1 206 37.4
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 6.9e-16 88.2 107 49.5
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 1.2e-15 87.4 137 43.8
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 2.6e-15 86.3 141 40.4
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 1.0e-14 84.3 140 39.3
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 1.7e-14 83.6 141 40.4
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 2.9e-14 82.8 132 41.7
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 5.0e-14 82.0 147 37.4
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 5.0e-14 82.0 143 37.8
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 1.4e-13 80.5 141 38.3
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 5.5e-13 78.6 90 46.7
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 7.2e-13 78.2 136 41.9
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 9.3e-13 77.8 141 36.2
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 3.5e-12 75.9 104 42.3
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 3.5e-12 75.9 104 42.3
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 5.1e-11 72.0 102 45.1
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 4.3e-10 68.9 45 71.1
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 1.4e-08 63.9 150 37.3
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.6e-07 59.7 55 56.4


User provided reference genes

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