Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.6e-68 260.8 128 100.0
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.9e-34 147.5 137 57.7
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.4e-29 133.3 137 54.7
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 8.5e-24 114.0 103 59.2
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.7e-21 104.4 140 47.9
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 6.7e-21 104.4 140 47.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 5.7e-20 101.3 127 48.0
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.4e-20 100.9 128 48.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.3e-19 100.1 135 49.6
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.7e-19 98.6 140 46.4
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 3.7e-19 98.6 126 49.2
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 6.3e-19 97.8 131 48.1
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.8e-18 96.3 134 47.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.1e-18 95.1 131 47.3
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 9.1e-18 94.0 135 47.4
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.2e-17 93.6 133 46.6
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.6e-17 93.2 125 47.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.6e-17 92.4 129 48.1
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.9e-17 91.3 131 49.6
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.9e-17 91.3 131 50.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.7e-17 90.9 131 50.4
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.7e-17 90.9 133 45.9
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-16 90.5 132 47.0
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.3e-16 90.1 127 47.2
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.7e-16 89.7 127 48.0
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.2e-16 89.4 127 47.2
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.8e-16 88.6 131 49.6
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 5.0e-16 88.2 131 47.3
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.0e-16 88.2 133 45.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.0e-16 88.2 128 43.8
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.9e-15 86.3 131 48.1
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-15 86.3 131 48.1
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.9e-15 86.3 131 47.3
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.9e-15 86.3 131 48.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 5.5e-15 84.7 135 45.9
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-15 84.7 130 46.2
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 5.5e-15 84.7 127 42.5
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.5e-15 84.7 125 42.4
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 47.3
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 48.1
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 7.2e-15 84.3 131 47.3
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 7.2e-15 84.3 122 42.6
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 7.2e-15 84.3 129 44.2
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 9.4e-15 84.0 129 46.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 131 48.1
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 131 48.1
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.2e-14 83.6 143 41.3
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-14 83.2 131 46.6
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.6e-14 83.2 131 46.6
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-14 83.2 131 43.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.1e-14 82.8 144 41.0
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.1e-14 82.8 112 49.1
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.1e-14 82.8 135 40.7
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.1e-14 82.8 125 42.4
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 47.3
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.6e-14 82.0 131 46.6
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.1e-14 81.3 135 40.0
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-14 81.3 131 47.3
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 6.1e-14 81.3 131 47.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 6.1e-14 81.3 131 43.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.1e-14 81.3 127 41.7
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.1e-14 81.3 131 46.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-13 80.1 131 45.8
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.4e-13 80.1 127 40.9
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.8e-13 79.7 135 40.0
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.8e-13 79.7 124 41.1
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-13 79.3 132 40.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-13 79.3 133 38.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-13 79.3 133 38.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-13 79.3 133 38.3
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.0e-13 79.0 125 45.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 5.2e-13 78.2 126 38.9
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 5.2e-13 78.2 117 48.7
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.2e-13 78.2 128 38.3
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.8e-13 77.8 138 42.0
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 6.8e-13 77.8 138 37.7
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 6.8e-13 77.8 127 41.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 6.8e-13 77.8 117 47.9
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 8.8e-13 77.4 129 44.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-12 77.0 129 41.1
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.5e-12 76.6 135 40.0
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.0e-12 76.3 137 41.6
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-12 75.5 132 42.4
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.4e-12 75.5 135 35.6
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-12 75.1 135 39.3
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.4e-12 75.1 135 39.3
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 7.5e-12 74.3 126 38.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-11 73.6 128 37.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.2e-11 72.8 121 42.1
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.8e-11 72.4 136 36.8
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 4.8e-11 71.6 127 37.0
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 4.8e-11 71.6 127 37.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 4.8e-11 71.6 125 42.4
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-11 71.2 136 37.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 6.3e-11 71.2 128 39.1
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 8.3e-11 70.9 125 35.2
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 8.3e-11 70.9 131 39.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.3e-11 70.9 133 40.6
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.1e-10 70.5 60 58.3
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.1e-10 70.5 116 42.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.4e-10 70.1 129 40.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.4e-10 70.1 130 39.2
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.8e-10 69.7 129 38.8
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.8e-10 69.7 116 41.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.8e-10 69.7 133 34.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.8e-10 69.7 133 37.6
EL10As8g23917 Beta vulgaris HOM05D003805 ORTHO05D004300 2.4e-10 69.3 107 46.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.4e-10 69.3 130 38.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-10 69.3 133 36.1
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.4e-10 69.3 114 43.9
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.4e-10 69.3 114 43.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.4e-10 69.3 127 37.0
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.1e-10 68.9 131 36.6
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.1e-10 68.9 131 38.9
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 3.1e-10 68.9 128 39.8
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.4e-10 68.2 133 41.4
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.4e-10 68.2 131 38.9
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 5.4e-10 68.2 128 39.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 7.0e-10 67.8 134 37.3
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 7.0e-10 67.8 134 37.3
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 7.0e-10 67.8 134 37.3
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 7.0e-10 67.8 138 34.8
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 9.1e-10 67.4 135 35.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 9.1e-10 67.4 60 51.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.2e-09 67.0 133 34.6
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-09 67.0 131 34.4
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.2e-09 67.0 112 42.9
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.2e-09 67.0 112 42.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.6e-09 66.6 59 57.6
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 2.7e-09 65.9 135 37.0
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.7e-09 65.9 120 37.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.5e-09 65.5 113 40.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-09 65.5 112 38.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 4.5e-09 65.1 112 42.0
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.9e-09 64.7 112 39.3
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.7e-09 64.3 134 39.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.0e-08 63.9 112 41.1
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-08 63.5 162 30.2
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.3e-08 63.5 125 37.6
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.7e-08 63.2 121 39.7
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.2e-08 62.8 51 56.9
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.2e-08 62.8 112 39.3
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.9e-08 62.4 114 39.5
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.8e-08 62.0 129 41.9
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.8e-08 62.0 128 36.7
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 5.0e-08 61.6 128 36.7
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 6.5e-08 61.2 116 36.2
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.5e-08 60.8 128 36.7
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.5e-07 60.1 113 39.8
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.5e-07 60.1 127 37.8
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-07 57.4 37 56.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.4e-07 57.4 114 41.2
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.6e-06 56.6 36 58.3
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.1e-06 56.2 115 39.1
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.7e-06 55.8 130 40.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 2.7e-06 55.8 49 53.1
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.7e-06 55.8 113 39.8
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.6e-06 55.5 112 39.3
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 8.0e-06 54.3 111 35.1


User provided reference genes

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