Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.5e-204 716.1 401 100.0
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 3.5e-116 422.5 315 66.0
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.2e-113 414.1 329 63.8
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.8e-112 410.2 364 59.3
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.2e-111 407.5 361 58.2
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 3.4e-111 406.0 352 59.1
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 4.4e-111 405.6 352 59.9
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 9.9e-111 404.4 318 62.3
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 4.9e-110 402.1 352 58.8
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 4.9e-110 402.1 366 57.7
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 4.9e-110 402.1 352 58.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.9e-109 400.2 361 58.4
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.2e-109 399.4 366 57.7
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 4.1e-109 399.1 361 57.3
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 5.4e-109 398.7 352 58.0
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 7.1e-109 398.3 343 58.0
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 9.2e-109 397.9 361 57.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 9.2e-109 397.9 361 56.8
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.6e-108 397.1 366 57.4
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.0e-107 394.4 361 55.7
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 2.3e-107 393.3 363 55.9
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 3.0e-107 392.9 353 58.6
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.6e-107 391.3 353 56.7
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.6e-107 391.3 353 56.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 8.6e-107 391.3 353 56.7
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.5e-106 390.6 407 51.8
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 3.3e-106 389.4 367 53.7
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 9.6e-106 387.9 352 56.2
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.6e-105 387.1 352 58.0
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.6e-105 387.1 353 57.8
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 3.6e-105 386.0 361 56.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 6.2e-105 385.2 349 57.0
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 6.2e-105 385.2 353 57.2
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 8.1e-105 384.8 325 58.8
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 8.1e-105 384.8 361 54.8
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 1.1e-104 384.4 341 57.8
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.4e-104 384.0 333 58.0
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 5.2e-104 382.1 337 57.0
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 5.2e-104 382.1 361 54.6
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 6.9e-104 381.7 337 57.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.5e-103 380.6 347 58.2
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.4e-103 379.4 348 55.7
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 5.8e-103 378.6 314 59.6
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.7e-102 377.1 352 56.2
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 2.9e-102 376.3 366 54.4
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 6.4e-102 375.2 362 52.2
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 3.2e-101 372.9 390 50.8
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 5.4e-101 372.1 361 55.7
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.4e-101 372.1 345 54.5
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 9.3e-101 371.3 362 55.5
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.6e-100 370.5 332 55.4
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 6.0e-100 368.6 353 54.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 1.3e-99 367.5 351 65.8
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 2.3e-99 366.7 361 65.1
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.0e-99 366.3 240 75.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 5.1e-99 365.5 333 55.3
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 8.7e-99 364.8 333 55.0
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 8.7e-99 364.8 343 56.0
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.9e-98 363.6 240 71.7
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.9e-98 363.6 361 63.4
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 3.3e-98 362.8 327 56.6
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 4.3e-98 362.5 353 54.7
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 9.6e-98 361.3 358 55.0
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 1.3e-97 360.9 299 60.9
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.1e-97 360.1 333 54.4
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.1e-97 360.1 352 61.4
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.4e-96 357.5 347 52.7
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.8e-96 357.1 361 51.5
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 6.9e-96 355.1 347 51.9
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.6e-95 353.2 361 62.3
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 5.8e-95 352.1 352 62.8
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 2.4e-93 346.7 361 49.9
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 7.1e-93 345.1 347 50.7
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 9.3e-93 344.7 361 49.9
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.2e-92 344.4 234 70.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.2e-92 344.4 361 49.0
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.2e-92 344.4 361 49.6
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 2.1e-92 343.6 338 52.1
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 6.0e-92 342.0 240 68.3
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.0e-91 341.3 371 50.1
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.8e-91 340.5 329 55.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 3.0e-91 339.7 329 63.8
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 2.5e-90 336.7 333 51.4
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 9.6e-90 334.7 333 52.6
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 3.6e-89 332.8 328 53.0
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.4e-88 330.1 333 51.7
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.0e-87 327.0 354 49.4
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.3e-86 324.3 352 55.1
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 4.9e-86 322.4 219 68.5
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.4e-85 320.9 209 74.6
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.2e-84 317.8 420 43.3
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.5e-84 316.2 209 70.3
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.3e-83 314.3 401 46.4
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 3.7e-81 306.2 338 49.1
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 8.1e-81 305.1 339 49.3
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.9e-78 296.6 305 60.0
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.3e-75 287.0 242 57.9
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 6.9e-72 275.4 202 66.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.3e-70 271.2 240 57.9
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.5e-69 265.8 243 54.7
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.2e-68 264.6 241 57.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 8.2e-57 225.3 229 52.8
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.2e-46 190.7 176 55.1
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.3e-42 176.8 113 71.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.3e-41 174.9 198 45.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 5.5e-37 159.5 171 48.0
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 5.2e-35 152.9 227 58.6
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 3.4e-34 150.2 184 47.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.7e-33 146.7 199 40.7
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 1.2e-18 98.6 191 36.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.5e-18 98.2 175 34.3
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.4e-16 90.9 237 29.5
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.9e-13 81.3 203 34.5
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.5e-13 80.9 201 30.8
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 7.3e-13 79.3 220 27.7
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 9.5e-13 79.0 195 32.3
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.6e-12 78.2 190 31.1
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.8e-12 77.4 203 29.6
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.8e-12 77.4 203 29.6
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.4e-11 75.1 187 30.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 3.1e-11 73.9 179 29.6
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 4.0e-11 73.6 158 34.8
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 5.2e-11 73.2 186 30.6
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 5.2e-11 73.2 203 28.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.6e-10 70.9 185 28.6
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 7.5e-10 69.3 171 31.0
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 9.8e-10 68.9 193 29.0
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.3e-09 68.6 184 31.5
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.3e-09 68.6 206 32.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 2.2e-09 67.8 193 29.0
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 2.9e-09 67.4 184 31.0
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 4.9e-09 66.6 158 31.6
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.1e-08 65.5 196 25.0
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 1.9e-08 64.7 163 28.8
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 3.2e-08 63.9 159 30.8
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 5.4e-08 63.2 185 27.0
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 7.0e-08 62.8 130 28.5
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 9.2e-08 62.4 199 26.1
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.0e-07 61.2 187 28.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 4.6e-07 60.1 154 29.2
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 6.0e-07 59.7 48 52.1
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.3e-06 58.5 158 28.5


User provided reference genes

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