Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-93 346.7 177 100.0
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.0e-55 219.5 167 70.1
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.7e-54 216.5 142 78.9
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.2e-54 216.1 143 79.7
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.9e-54 214.9 142 78.2
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 6.4e-54 214.5 144 76.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.1e-53 213.8 138 80.4
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.1e-53 213.8 139 79.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-53 213.4 142 77.5
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.9e-53 213.0 156 73.1
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.9e-53 213.0 159 72.3
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.1e-53 211.8 142 76.8
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.4e-53 211.5 143 74.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 9.2e-53 210.7 139 79.9
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 9.2e-53 210.7 141 76.6
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.2e-52 210.3 137 79.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.6e-52 209.9 160 72.5
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.6e-52 209.9 150 73.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.6e-52 209.9 169 69.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.1e-52 209.5 144 78.5
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.1e-52 209.5 139 79.9
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 3.5e-52 208.8 160 72.5
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 4.6e-52 208.4 142 77.5
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.0e-52 208.0 139 77.0
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 7.8e-52 207.6 138 77.5
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.3e-51 206.1 155 72.3
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.3e-51 206.1 139 77.0
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 3.0e-51 205.7 150 73.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 5.1e-51 204.9 160 66.9
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 5.1e-51 204.9 150 73.3
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.1e-50 203.8 147 74.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.5e-50 203.4 142 75.4
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.5e-50 203.4 143 74.1
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.5e-50 202.6 141 74.5
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.5e-50 202.6 139 72.7
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.3e-50 201.8 151 71.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.6e-50 201.4 146 69.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 5.6e-50 201.4 155 69.0
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 5.6e-50 201.4 139 72.7
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 7.3e-50 201.1 151 65.6
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 7.3e-50 201.1 166 66.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 9.6e-50 200.7 138 76.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-49 200.3 151 70.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.2e-49 200.3 155 68.4
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.2e-49 200.3 138 76.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.2e-49 200.3 138 75.4
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.1e-49 199.5 160 71.2
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.1e-49 199.5 139 72.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.1e-49 199.5 149 71.1
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 4.7e-49 198.4 139 71.9
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 8.1e-49 197.6 152 68.4
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.1e-48 197.2 144 69.4
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.4e-48 196.8 139 71.9
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.4e-48 196.8 151 66.9
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.4e-48 196.8 141 71.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.8e-48 196.4 160 65.0
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 2.4e-48 196.1 144 70.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.0e-48 195.3 160 70.0
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.0e-48 195.3 139 74.1
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.0e-48 195.3 163 67.5
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 6.8e-48 194.5 143 69.2
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 6.8e-48 194.5 176 64.2
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 8.9e-48 194.1 143 69.2
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.9e-48 194.1 143 69.2
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.2e-47 193.7 139 70.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.5e-47 193.4 157 68.8
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.5e-47 193.4 151 71.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.5e-47 193.4 147 68.0
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.0e-47 193.0 138 70.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.6e-47 192.6 147 67.3
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.4e-47 192.2 138 70.3
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 3.4e-47 192.2 139 70.5
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.4e-47 191.8 157 68.2
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.7e-46 189.9 120 79.2
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.7e-46 189.9 103 96.1
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.2e-46 189.5 142 70.4
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.9e-46 189.1 142 71.8
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 3.8e-46 188.7 143 69.2
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 4.9e-46 188.3 143 68.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 8.4e-46 187.6 156 64.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.4e-46 187.6 103 95.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-45 186.8 141 69.5
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-45 186.8 141 69.5
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.4e-45 186.8 141 69.5
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 2.4e-45 186.0 142 69.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 4.2e-45 185.3 114 80.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 5.4e-45 184.9 142 68.3
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 5.4e-45 184.9 140 69.3
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-45 184.5 141 68.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-45 184.5 141 68.8
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-45 184.5 141 68.8
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 7.1e-45 184.5 141 68.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 7.1e-45 184.5 141 68.8
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 7.1e-45 184.5 153 66.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.1e-44 183.0 103 93.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 2.7e-44 182.6 142 69.7
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 3.5e-44 182.2 113 79.6
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 6.0e-44 181.4 144 68.1
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.0e-43 180.6 142 67.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.3e-43 179.5 138 71.0
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.3e-43 179.5 157 63.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 6.6e-43 177.9 123 74.8
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 6.6e-43 177.9 143 66.4
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 8.7e-43 177.6 110 78.2
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.1e-42 177.2 167 59.9
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.1e-41 172.9 123 68.3
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.8e-41 172.6 143 63.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 3.6e-41 172.2 110 79.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.2e-41 171.4 143 65.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 5.3e-40 168.3 139 66.2
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.9e-40 167.9 120 70.8
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.4e-39 165.6 118 66.9
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.4e-39 165.2 122 64.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.7e-38 163.3 144 59.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.9e-34 149.8 144 59.7
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.9e-30 136.0 109 61.5
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.8e-27 126.7 94 71.3
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.6e-25 120.2 109 63.3
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.5e-23 112.1 79 75.9
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 3.8e-22 109.0 71 78.9
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 8.4e-22 107.8 92 63.0
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 8.4e-22 107.8 135 43.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.7e-20 102.8 142 40.8
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 5.1e-19 98.6 108 46.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 8.2e-17 91.3 61 72.1
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.3e-16 88.6 71 64.8
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.4e-15 85.9 71 63.4
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.3e-14 84.0 110 37.3
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 5.5e-13 78.6 44 86.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.2e-12 77.4 106 45.3
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 4.6e-12 75.5 79 48.1
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 8.7e-11 71.2 56 62.5
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.3e-10 68.9 58 56.9
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 9.7e-10 67.8 96 36.5
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.6e-07 59.7 110 39.1
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.3e-06 57.4 63 55.6


User provided reference genes

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