Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 1.1e-61 239.6 109 100.0
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 1.1e-45 186.4 90 92.2
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 3.3e-37 158.3 90 76.7
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 4.4e-37 157.9 95 72.6
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 7.5e-37 157.1 90 75.6
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 1.7e-36 156.0 90 73.3
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 2.2e-36 155.6 90 74.4
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.2e-36 155.6 90 75.6
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 2.8e-36 155.2 89 76.4
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 3.7e-36 154.8 89 75.3
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 3.7e-36 154.8 90 76.7
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 4.8e-36 154.5 90 73.3
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 4.8e-36 154.5 90 74.4
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 4.8e-36 154.5 90 72.2
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 4.8e-36 154.5 90 73.3
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 6.3e-36 154.1 102 68.6
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 6.3e-36 154.1 90 73.3
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 8.2e-36 153.7 94 73.4
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 8.2e-36 153.7 90 74.4
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.1e-35 153.3 90 74.4
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 1.1e-35 153.3 90 71.1
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 1.1e-35 153.3 90 72.2
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 1.1e-35 153.3 89 75.3
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 1.4e-35 152.9 90 72.2
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 1.8e-35 152.5 90 73.3
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 1.8e-35 152.5 90 73.3
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 1.8e-35 152.5 90 74.4
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 1.8e-35 152.5 90 71.1
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 1.8e-35 152.5 90 75.6
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 3.1e-35 151.8 86 74.4
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 4.1e-35 151.4 89 73.0
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 7.0e-35 150.6 90 70.0
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 7.0e-35 150.6 89 70.8
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 9.1e-35 150.2 90 73.3
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 9.1e-35 150.2 88 73.9
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 1.2e-34 149.8 90 72.2
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 1.6e-34 149.4 90 68.9
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 1.6e-34 149.4 90 71.1
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 2.0e-34 149.1 89 70.8
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 2.0e-34 149.1 90 71.1
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 2.0e-34 149.1 90 71.1
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 2.0e-34 149.1 90 70.0
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 2.0e-34 149.1 90 68.9
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 3.5e-34 148.3 91 69.2
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 4.5e-34 147.9 89 70.8
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 4.5e-34 147.9 90 70.0
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 4.5e-34 147.9 90 72.2
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 4.5e-34 147.9 90 71.1
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 5.9e-34 147.5 90 70.0
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 5.9e-34 147.5 90 68.9
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 1.0e-33 146.7 87 72.4
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 1.0e-33 146.7 99 63.6
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 1.0e-33 146.7 90 68.9
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 1.3e-33 146.4 90 67.8
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 1.7e-33 146.0 90 68.9
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 2.2e-33 145.6 90 70.0
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 2.2e-33 145.6 90 70.0
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 2.9e-33 145.2 89 70.8
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 3.8e-33 144.8 86 72.1
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 6.5e-33 144.1 88 71.6
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 6.5e-33 144.1 88 70.5
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 6.5e-33 144.1 88 71.6
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 6.5e-33 144.1 89 69.7
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 8.5e-33 143.7 88 69.3
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 8.5e-33 143.7 90 67.8
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 8.5e-33 143.7 90 68.9
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 8.5e-33 143.7 91 67.0
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 8.5e-33 143.7 91 68.1
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 8.5e-33 143.7 84 72.6
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 1.1e-32 143.3 90 67.8
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 1.1e-32 143.3 88 69.3
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.1e-32 143.3 88 69.3
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 1.1e-32 143.3 93 64.5
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 1.1e-32 143.3 90 67.8
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 1.5e-32 142.9 94 67.0
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 1.5e-32 142.9 88 69.3
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 1.5e-32 142.9 90 67.8
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 1.9e-32 142.5 90 66.7
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 1.9e-32 142.5 90 65.6
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 2.5e-32 142.1 88 70.5
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 3.2e-32 141.7 88 69.3
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 3.2e-32 141.7 88 70.5
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 4.2e-32 141.4 90 65.6
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 7.2e-32 140.6 87 71.3
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 9.4e-32 140.2 90 66.7
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 1.6e-31 139.4 86 70.9
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 1.6e-31 139.4 90 65.6
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 2.7e-31 138.7 93 65.6
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 4.7e-31 137.9 91 65.9
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 5.2e-30 134.4 90 64.4
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 6.8e-30 134.0 89 65.2
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 3.7e-28 128.3 117 53.0
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 2.9e-25 118.6 75 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 4.2e-24 114.8 86 54.7
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 9.5e-24 113.6 87 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 4.0e-22 108.2 86 53.5
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.2e-21 106.7 89 49.4
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 2.6e-21 105.5 88 51.1
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 9.8e-21 103.6 86 50.0
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 9.8e-21 103.6 88 51.1
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 1.5e-13 79.7 78 43.6
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 7.0e-11 70.9 90 40.0
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 1.1e-08 63.5 99 34.3
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 2.5e-08 62.4 100 35.0
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.6e-08 61.2 100 35.0
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.6e-08 61.2 100 35.0
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 5.6e-08 61.2 102 30.4
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 7.3e-08 60.8 98 30.6
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.1e-07 59.3 87 31.0
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 2.1e-07 59.3 85 31.8
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.1e-07 59.3 87 32.2
Mapoly0166s0008 Marchantia polymorpha HOM05D003340 ORTHO05D003775 2.8e-07 58.9 94 31.9
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 3.6e-07 58.5 99 30.3
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 3.6e-07 58.5 85 35.3
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 6.2e-07 57.8 87 33.3
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 6.2e-07 57.8 87 33.3
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 8.0e-07 57.4 88 29.5
HPP92_013888 Vanilla planifolia HOM05D003340 ORTHO05D003775 8.0e-07 57.4 94 34.0
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 1.1e-06 57.0 85 34.1
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 1.4e-06 56.6 87 33.3
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.4e-06 56.6 87 29.9
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 1.8e-06 56.2 86 33.7
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.8e-06 56.2 88 29.5
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 2.3e-06 55.8 84 33.3
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 3.1e-06 55.5 104 29.8
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 4.0e-06 55.1 87 31.0
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.0e-06 55.1 95 33.7
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 4.0e-06 55.1 99 30.3
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 4.0e-06 55.1 83 32.5
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 4.0e-06 55.1 96 29.2
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 5.2e-06 54.7 87 31.0
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 5.2e-06 54.7 87 31.0
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 5.2e-06 54.7 99 28.3
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 6.8e-06 54.3 95 31.6
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 8.9e-06 53.9 90 33.3


User provided reference genes

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