Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 6.3e-249 863.6 424 100.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.4e-176 623.2 424 72.6
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.2e-176 621.7 424 71.7
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.0e-174 617.1 427 69.8
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.3e-174 616.7 427 70.0
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.0e-174 615.5 424 71.0
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 5.1e-174 614.8 427 71.2
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 5.1e-174 614.8 424 71.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.1e-173 613.6 424 70.8
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.1e-173 613.6 424 70.8
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.9e-173 612.8 424 71.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.6e-172 609.8 424 71.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.8e-172 609.0 425 70.6
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.8e-171 606.3 424 72.4
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.4e-171 605.9 424 71.0
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 4.0e-171 605.1 424 69.1
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.0e-171 605.1 424 69.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 6.9e-171 604.4 424 69.1
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.6e-170 602.4 424 71.0
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.6e-170 602.4 424 70.3
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.8e-170 601.3 424 70.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.8e-170 601.3 424 69.8
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 5.8e-170 601.3 424 70.8
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 9.9e-170 600.5 424 70.8
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.9e-169 599.0 424 69.8
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.9e-169 599.0 424 68.9
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 3.8e-169 598.6 424 69.6
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.1e-168 597.0 424 69.6
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.9e-168 596.3 424 69.8
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 3.2e-168 595.5 424 69.3
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 9.3e-168 594.0 424 68.6
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.1e-167 592.8 424 68.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 3.9e-166 588.6 423 70.0
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.7e-166 587.4 424 68.6
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.5e-165 586.6 424 68.4
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.5e-165 585.9 424 69.3
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.5e-165 585.9 424 69.3
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 7.4e-165 584.3 424 68.4
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.3e-164 583.6 424 68.2
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.6e-164 583.2 409 69.4
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.1e-164 582.8 424 69.1
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.1e-164 580.9 424 67.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.3e-163 578.2 424 67.7
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 9.0e-163 577.4 424 67.0
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.0e-162 576.2 424 67.9
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 4.5e-162 575.1 424 66.5
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 5.8e-162 574.7 424 66.7
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.3e-161 573.5 424 67.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.3e-161 573.5 424 67.2
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.3e-161 573.5 424 66.5
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.7e-161 573.2 424 67.0
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.2e-161 572.8 425 67.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.9e-161 572.4 424 67.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.8e-161 572.0 424 67.5
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.8e-161 572.0 424 67.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-160 570.1 424 67.2
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.4e-160 569.3 427 64.9
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.4e-160 569.3 424 67.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 2.4e-160 569.3 424 66.3
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.2e-160 568.9 424 66.5
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.5e-160 568.2 424 67.2
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 5.5e-160 568.2 424 65.8
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.2e-159 567.0 419 66.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.1e-159 566.2 424 66.3
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.0e-159 564.7 424 66.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 5.1e-158 561.6 425 64.9
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.5e-157 560.1 424 65.8
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.5e-157 559.3 424 64.9
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 4.3e-157 558.5 424 66.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.3e-156 557.0 412 66.3
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.6e-156 556.6 424 64.9
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 8.2e-156 554.3 424 63.4
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.4e-155 553.5 424 63.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 9.0e-155 550.8 424 63.4
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.4e-154 548.9 424 62.5
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.7e-153 546.6 424 64.4
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.2e-153 546.2 424 65.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 8.4e-153 544.3 424 62.5
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.1e-152 543.9 411 65.0
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.4e-152 543.5 424 63.7
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.5e-152 542.7 423 63.4
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.5e-152 542.7 424 63.9
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.2e-152 542.3 424 63.2
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.2e-152 542.0 424 63.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.1e-152 541.2 424 62.7
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.1e-151 539.7 425 64.2
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 5.1e-150 535.0 424 63.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.1e-149 533.9 427 61.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.1e-149 533.9 425 62.4
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 4.3e-149 531.9 424 63.2
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 7.4e-149 531.2 424 63.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 8.2e-148 527.7 424 63.2
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.4e-147 526.9 424 61.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.1e-147 525.8 424 63.4
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 6.9e-147 524.6 424 61.8
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 6.9e-147 524.6 424 61.6
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 6.9e-147 524.6 424 61.8
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.6e-146 521.2 424 62.0
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 2.2e-145 519.6 424 60.8
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 7.2e-144 514.6 424 61.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.2e-143 513.8 424 61.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.1e-143 513.1 425 63.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.6e-143 511.9 424 60.4
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 4.6e-143 511.9 424 60.4
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 3.9e-142 508.8 425 63.1
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.1e-141 507.3 426 62.7
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.1e-139 499.2 424 57.3
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.1e-139 499.2 424 60.8
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 5.3e-139 498.4 424 59.0
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.1e-139 497.7 381 64.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.9e-137 492.7 424 56.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.7e-135 485.3 424 56.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 4.5e-130 468.8 424 55.2
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.8e-123 446.8 360 65.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 8.5e-121 438.0 428 52.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.9e-120 436.8 428 53.3
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.8e-118 430.3 409 52.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 8.6e-105 384.8 251 75.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.2e-104 382.5 415 46.0
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.2e-104 381.7 426 48.4
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 8.9e-102 374.8 282 64.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.4e-99 366.7 329 56.2
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.1e-91 341.3 416 44.0
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.2e-87 327.8 306 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 6.8e-86 322.0 379 44.3
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.6e-82 310.8 309 52.1
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.8e-78 297.4 252 58.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.5e-64 250.4 306 44.1
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-59 233.0 266 50.0
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.1e-51 208.4 133 71.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.1e-42 177.6 133 66.2
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 7.9e-42 175.6 161 55.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.9e-30 136.0 99 68.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-27 126.7 88 69.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 3.1e-22 110.5 71 73.2
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-21 108.2 74 70.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-21 107.5 71 73.2
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-21 107.5 71 73.2
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 4.5e-21 106.7 79 63.3
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-20 105.5 71 71.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.9e-20 104.0 100 55.0
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-09 68.2 260 26.9
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-09 68.2 260 26.9
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 3.0e-09 67.4 260 26.9
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 1.1e-08 65.5 368 23.1
Nitab4.5_0008981g0040 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.1e-08 65.5 417 23.0
MD09G1101800 Malus domestica HOM05D008065 ORTHO05D010197 3.3e-08 63.9 250 24.4
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 5.7e-08 63.2 459 21.1
MD17G1089200 Malus domestica HOM05D008065 ORTHO05D010197 7.4e-08 62.8 251 24.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.7e-07 61.6 82 43.9
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 3.7e-07 60.5 250 26.4
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 8.2e-07 59.3 352 25.0
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 4.1e-06 57.0 237 25.7


User provided reference genes

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