Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.8e-70 267.3 145 100.0
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 4.6e-58 228.0 145 79.3
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 6.0e-58 227.6 145 77.9
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 7.8e-58 227.3 145 77.9
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 7.8e-58 227.3 145 77.9
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.0e-57 226.9 145 82.8
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.3e-57 226.5 147 85.0
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.3e-57 226.5 145 78.6
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 3.0e-57 225.3 145 79.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 5.1e-57 224.6 145 78.6
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 6.6e-57 224.2 145 77.2
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 6.6e-57 224.2 145 76.6
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.5e-56 223.0 145 81.4
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 2.5e-56 222.2 145 77.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 2.5e-56 222.2 145 76.6
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.5e-56 222.2 145 76.6
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.3e-56 221.9 145 77.2
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 3.3e-56 221.9 145 81.4
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 4.3e-56 221.5 145 77.2
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 7.3e-56 220.7 145 76.6
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.2e-55 219.9 145 77.2
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.2e-55 219.9 146 76.0
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.6e-55 219.5 145 82.8
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.1e-55 219.2 145 83.4
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 2.8e-55 218.8 150 72.7
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.8e-55 218.8 145 76.6
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 4.7e-55 218.0 145 75.9
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.2e-55 217.6 145 80.0
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 75.9
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 74.5
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 73.8
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 1.1e-54 216.9 145 73.8
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.1e-54 216.9 145 75.9
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-54 216.9 145 75.2
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 1.1e-54 216.9 145 75.9
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.4e-54 216.5 145 75.2
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.8e-54 216.1 146 81.5
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.8e-54 216.1 145 75.9
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.4e-54 215.7 146 78.8
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.1e-54 215.3 145 74.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.1e-54 215.3 145 77.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.2e-54 214.5 133 81.2
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 73.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 5.2e-54 214.5 141 75.9
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 6.8e-54 214.2 145 75.9
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 6.8e-54 214.2 137 78.8
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 74.5
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 73.8
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 74.5
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 74.5
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.2e-53 213.4 148 73.0
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.2e-53 213.4 148 73.0
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.2e-53 213.4 145 73.1
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.2e-53 213.4 148 73.0
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.2e-53 213.4 137 77.4
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.5e-53 213.0 145 74.5
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.5e-53 213.0 144 74.3
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 2.0e-53 212.6 145 72.4
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.6e-53 212.2 133 79.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.6e-53 212.2 147 74.1
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.6e-53 212.2 145 73.8
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 3.4e-53 211.8 146 72.6
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.4e-53 211.8 147 78.9
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 4.4e-53 211.5 146 72.6
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 4.4e-53 211.5 145 73.8
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 5.8e-53 211.1 145 74.5
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 5.8e-53 211.1 145 74.5
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.6e-53 210.7 146 72.6
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.3e-52 209.9 145 73.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 73.1
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.7e-52 209.5 146 81.5
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 72.4
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.2e-52 209.1 132 79.5
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.2e-52 209.1 145 77.9
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 2.2e-52 209.1 145 73.8
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 2.9e-52 208.8 145 79.3
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 2.9e-52 208.8 146 74.7
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.9e-52 208.8 145 74.5
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.9e-52 208.8 145 74.5
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.9e-52 208.8 146 78.8
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 2.9e-52 208.8 145 73.1
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.9e-52 208.0 145 73.1
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 4.9e-52 208.0 147 75.5
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 8.4e-52 207.2 145 78.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.1e-51 206.8 140 73.6
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-51 206.5 148 74.3
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-51 206.5 148 74.3
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.4e-51 206.5 145 74.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.9e-51 206.1 145 80.0
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 2.4e-51 205.7 144 73.6
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 3.2e-51 205.3 152 73.7
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 3.2e-51 205.3 148 79.7
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.1e-51 204.9 148 70.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 7.1e-51 204.1 113 86.7
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.2e-51 203.8 146 77.4
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 9.2e-51 203.8 146 77.4
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.1e-50 202.6 146 71.2
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 2.1e-50 202.6 145 76.6
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 6.0e-50 201.1 145 73.1
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.0e-50 201.1 110 86.4
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 6.0e-50 201.1 145 73.8
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 7.8e-50 200.7 144 80.6
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.0e-49 200.3 166 64.5
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.0e-49 200.3 145 71.7
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.0e-49 200.3 148 68.2
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.0e-49 198.7 145 71.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 5.1e-49 198.0 170 62.4
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 5.1e-49 198.0 145 71.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 6.6e-49 197.6 134 73.9
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 6.6e-49 197.6 145 71.7
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 8.7e-49 197.2 145 70.3
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 8.7e-49 197.2 145 69.7
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.1e-48 196.8 147 77.6
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.1e-48 196.8 147 77.6
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.5e-48 195.7 143 71.3
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 4.3e-48 194.9 147 76.9
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 3.6e-47 191.8 221 51.6
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.4e-46 189.9 104 87.5
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.8e-46 189.5 109 80.7
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.2e-45 186.8 113 80.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.4e-44 181.0 176 56.8
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-42 176.8 206 54.9
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 3.3e-40 168.7 116 77.6
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.6e-39 166.4 109 77.1
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 2.1e-39 166.0 92 87.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.8e-39 165.6 91 87.9
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 2.8e-39 165.6 90 90.0
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 8.1e-39 164.1 111 73.9
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 4.0e-38 161.8 88 87.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 2.2e-36 156.0 112 79.5
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.5e-34 148.7 99 80.8
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.4e-30 136.7 108 59.3
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 5.3e-30 134.8 108 61.1
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.9e-30 134.4 147 60.5
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 5.1e-25 118.2 108 56.5
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 3.3e-24 115.5 63 92.1
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 9.0e-22 107.5 60 88.3
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.4e-21 105.5 89 61.8
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 7.6e-21 104.4 73 67.1
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.3e-20 103.6 86 55.8
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 8.7e-17 90.9 113 47.8
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.4e-14 83.6 87 46.0
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.8e-14 83.2 100 45.0
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.2e-11 72.4 63 57.1
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 4.2e-11 72.0 49 71.4
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.9e-09 65.5 60 55.0
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 6.7e-09 64.7 35 85.7
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.7e-07 60.1 72 43.1
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 2.2e-07 59.7 68 48.5
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 6.3e-07 58.2 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 6.3e-07 58.2 43 67.4
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 6.3e-07 58.2 87 44.8
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 1.4e-06 57.0 29 86.2
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 9.1e-06 54.3 56 51.8


User provided reference genes

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