Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 0.0e+00 1140.2 572 100.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 8.8e-230 800.4 576 68.1
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.6e-226 789.6 572 68.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.4e-222 776.5 572 68.4
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.4e-221 771.9 572 68.2
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 5.9e-218 761.1 575 65.2
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.3e-217 760.0 575 64.2
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.5e-216 756.5 575 63.5
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 5.5e-216 754.6 574 64.1
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 7.2e-216 754.2 574 64.1
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 7.2e-216 754.2 574 64.1
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.8e-215 752.3 574 63.2
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.4e-214 750.0 574 63.9
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 5.2e-214 748.0 574 63.4
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.3e-212 740.7 576 63.9
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.0e-211 737.6 576 63.7
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 9.2e-211 737.3 576 63.5
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.6e-210 736.5 575 61.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.7e-210 735.7 575 62.8
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.7e-210 735.7 574 63.4
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.0e-209 733.8 576 63.4
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.7e-209 733.0 576 63.0
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 6.6e-209 731.1 574 63.2
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 8.6e-209 730.7 576 62.3
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.5e-208 729.9 577 62.9
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.0e-206 723.8 572 61.4
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.2e-205 720.3 576 62.2
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.0e-205 719.5 573 60.9
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 2.0e-205 719.5 575 61.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.4e-205 718.8 575 61.6
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 7.0e-203 711.1 575 61.4
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 7.0e-203 711.1 573 60.2
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 3.9e-201 705.3 572 61.4
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 5.0e-201 704.9 574 61.1
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 7.3e-200 701.0 575 62.4
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 7.3e-200 701.0 586 60.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 9.5e-200 700.7 577 60.5
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 6.2e-199 698.0 572 60.1
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 1.4e-198 696.8 573 60.9
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 3.1e-198 695.7 565 60.5
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.2e-197 693.7 575 60.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 1.5e-197 693.3 572 59.8
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 5.8e-197 691.4 575 60.5
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-196 689.5 606 57.4
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 2.2e-196 689.5 577 59.1
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 2.2e-196 689.5 574 59.6
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 2.2e-196 689.5 575 59.0
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 6.4e-196 688.0 576 59.5
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 8.3e-196 687.6 572 59.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 3.2e-195 685.6 574 59.4
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 4.1e-195 685.3 596 57.6
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 9.2e-195 684.1 572 59.4
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 4.6e-194 681.8 577 59.3
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 7.8e-194 681.0 572 58.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 7.8e-194 681.0 575 57.9
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.3e-193 680.2 573 60.0
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 3.0e-193 679.1 575 57.7
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.1e-192 677.2 576 58.2
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 5.6e-192 674.9 575 58.1
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.8e-191 672.5 573 58.3
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.3e-190 669.5 575 57.9
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 6.8e-190 667.9 576 59.5
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 7.5e-189 664.5 575 58.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.9e-188 662.5 604 56.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 6.4e-188 661.4 575 58.8
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.1e-187 660.6 576 58.7
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.3e-185 652.9 577 57.9
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.9e-184 649.8 573 57.8
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.6e-183 646.7 574 57.3
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.8e-183 646.0 574 57.5
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.6e-183 645.6 577 56.5
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 6.2e-183 644.8 574 56.3
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.1e-179 634.0 576 57.3
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 3.9e-177 625.5 573 55.1
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 3.6e-175 619.0 574 54.5
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 3.6e-175 619.0 574 54.5
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 6.2e-175 618.2 514 59.5
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.1e-174 617.5 645 49.5
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.1e-174 617.5 572 55.9
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 5.3e-174 615.1 530 58.3
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 7.6e-173 611.3 574 54.4
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 6.4e-172 608.2 574 53.8
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 6.4e-172 608.2 574 53.8
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 7.1e-171 604.7 494 60.9
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.8e-170 601.3 603 52.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.0e-169 600.9 552 56.3
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 6.6e-169 598.2 549 55.9
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.8e-166 590.1 519 56.6
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 3.0e-161 572.8 548 55.5
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.9e-160 570.1 680 46.9
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 5.6e-160 568.5 428 65.0
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.6e-159 567.0 502 56.4
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 2.4e-150 536.6 476 56.1
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.2e-149 534.3 441 59.0
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.0e-148 531.2 421 61.3
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 6.5e-148 528.5 394 64.2
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 7.4e-144 515.0 578 49.1
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.7e-140 503.8 498 55.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.4e-139 500.7 552 47.1
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 3.1e-134 483.0 394 59.4
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 6.5e-132 475.3 472 53.8
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.2e-125 454.5 368 63.3
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.8e-121 440.7 356 61.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.4e-120 436.0 458 50.9
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.3e-119 434.5 608 39.1
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 6.8e-113 412.1 577 41.8
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 4.4e-112 409.5 600 39.8
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.5e-108 395.6 475 49.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.2e-107 393.3 294 65.0
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 4.9e-63 246.5 245 50.2
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.2e-62 243.8 382 39.8
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.4e-57 228.4 276 47.1
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 2.4e-54 217.6 528 30.5
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 3.9e-52 210.3 208 51.0
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.2e-46 190.7 159 59.1
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.3e-36 158.7 172 52.9
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 2.0e-32 144.8 459 25.7
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.9e-31 141.0 597 23.6
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.9e-31 141.0 149 46.3
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 1.9e-30 138.3 99 61.6
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.3e-28 132.1 74 77.0
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.0e-28 131.0 231 37.7
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 2.8e-26 124.4 122 50.8
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 3.7e-26 124.0 121 49.6
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.5e-22 111.3 342 23.7
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 8.8e-20 102.8 115 45.2
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 8.8e-20 102.8 115 45.2
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.2e-18 96.3 113 50.4
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.4e-17 95.5 89 51.7
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.1e-17 94.4 73 65.8
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 5.3e-17 93.6 52 82.7
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 5.9e-16 90.1 82 57.3
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-13 82.4 68 57.4
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.0e-07 62.8 42 64.3
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 8.5e-07 59.7 51 51.0
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.5e-06 58.2 70 45.7
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 9.4e-06 56.2 121 30.6


User provided reference genes

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