Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001350 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.5e-245 851.7 423 100.0
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 9.3e-51 205.3 395 35.7
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-46 191.8 347 34.3
Sc06g0001740 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.1e-39 167.5 209 42.6
Sc02g0007350 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.6e-32 142.9 163 46.6
Sc13g0007440 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.2e-31 139.0 191 39.3
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 9.3e-27 125.6 197 32.5
Sc07g0002530 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.6e-26 124.8 247 30.4
Sc06g0006060 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.5e-24 117.5 131 46.6
Sc25g0000230 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.4e-19 101.7 195 33.3
Sc08g0006410 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.5e-19 99.8 235 27.7
Sc01g0002340 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.1e-18 96.3 122 35.2
Sc08g0006400 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.0e-17 95.5 226 34.5
Sc07g0000050 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.8e-17 94.7 163 31.3
Sc19g0004470 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.3e-17 94.4 178 29.8
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 8.8e-17 92.4 112 37.5
Sc03g0004340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.1e-16 92.0 128 40.6
Sc04g0004290 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.3e-16 90.5 167 30.5
Sc16g0001340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.3e-16 90.5 113 35.4
Sc02g0007120 Simmondsia chinensis HOM05D011136 ORTHO05D010856 9.7e-16 89.0 110 37.3
Sc11g0007570 Simmondsia chinensis HOM05D000027 ORTHO05D000500 6.3e-15 86.3 135 35.6
Sc22g0001820 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.4e-14 84.3 227 26.9
Sc08g0006340 Simmondsia chinensis HOM05D027330 ORTHO05D010856 5.3e-14 83.2 104 34.6
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.6e-13 80.9 149 31.5
Sc08g0006360 Simmondsia chinensis HOM05D027330 ORTHO05D010856 2.6e-13 80.9 104 33.7
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.9e-13 79.7 149 30.9
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.2e-12 77.8 149 29.5
Sc06g0002140 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.2e-12 77.8 194 25.8
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 1.1e-11 75.5 160 28.8
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.9e-11 74.7 126 32.5
Sc01g0007310 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.9e-11 74.7 148 37.8
Sc07g0003070 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.9e-11 74.7 70 50.0
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 2.5e-11 74.3 162 31.5
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 2.5e-11 74.3 162 31.5
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.2e-11 73.9 120 31.7
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 3.2e-11 73.9 126 31.0
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 4.2e-11 73.6 156 28.2
Sc13g0006580 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.2e-10 72.0 95 32.6
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.6e-10 71.6 251 29.5
Sc12g0005620 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.1e-10 71.2 78 33.3
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.1e-10 71.2 277 24.2
Rhsim05G0024200 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.6e-10 70.5 156 27.6
COL.COLO4_25415 Corchorus olitorius HOM05D009258 ORTHO05D009583 1.0e-09 68.9 123 26.0
EL10Ac8g19650 Beta vulgaris HOM05D000992 ORTHO05D006704 1.4e-09 68.6 129 32.6
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.4e-09 68.6 127 30.7
COL.COLO4_27331 Corchorus olitorius HOM05D009258 ORTHO05D009583 2.3e-09 67.8 121 26.4
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.3e-09 67.8 100 31.0
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 3.0e-09 67.4 127 29.9
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 5.1e-09 66.6 167 29.3
EL10Ac7g16632 Beta vulgaris HOM05D008976 ORTHO05D011121 5.1e-09 66.6 166 27.7
Medtr5g065250 Medicago truncatula HOM05D002777 ORTHO05D001516 5.1e-09 66.6 116 31.9
EL10Ac4g08137 Beta vulgaris HOM05D008976 ORTHO05D011121 6.7e-09 66.2 176 29.0
Sc04g0005170 Simmondsia chinensis HOM05D009348 ORTHO05D010856 6.7e-09 66.2 75 40.0
Thecc.07G067600 Theobroma cacao HOM05D023671 ORTHO05D001516 6.7e-09 66.2 127 26.8
Thecc.09G068100 Theobroma cacao HOM05D012808 ORTHO05D011121 6.7e-09 66.2 95 34.7
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.0e-08 64.7 126 27.0
Lalb_Chr23g0273581 Lupinus albus HOM05D002777 ORTHO05D001516 2.0e-08 64.7 158 24.1
Actinidia11343 Actinidia chinensis HOM05D019814 ORTHO05D009356 2.6e-08 64.3 87 36.8
Sc04g0004590 Simmondsia chinensis HOM05D027330 ORTHO05D010856 3.3e-08 63.9 116 29.3
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 3.3e-08 63.9 126 29.4
EL10Ac3g06622 Beta vulgaris HOM05D008976 ORTHO05D011121 4.4e-08 63.5 142 29.6
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.4e-08 63.5 130 26.9
Sc04g0005250 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.4e-08 63.5 99 35.4
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 5.7e-08 63.2 126 26.2
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 5.7e-08 63.2 126 26.2
Sc12g0004940 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.7e-08 63.2 121 37.2
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 7.4e-08 62.8 112 32.1
Lsat_1_v5_gn_4_170541 Lactuca sativa HOM05D003915 ORTHO05D005386 7.4e-08 62.8 125 26.4
LjContig00081g0007509 Lotus japonicus HOM05D002777 ORTHO05D001516 7.4e-08 62.8 126 27.8
EL10Ac7g17991 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-07 62.0 158 27.2
COL.COLO4_03775 Corchorus olitorius HOM05D009258 ORTHO05D009583 1.3e-07 62.0 102 26.5
Lsat_1_v5_gn_4_60221 Lactuca sativa HOM05D008939 ORTHO05D011516 1.3e-07 62.0 134 28.4
EL10Ac1g01108 Beta vulgaris HOM05D008976 ORTHO05D011121 2.2e-07 61.2 169 27.8
EL10Ac6g14951 Beta vulgaris HOM05D008976 ORTHO05D011121 2.2e-07 61.2 161 28.0
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 2.8e-07 60.8 247 24.3
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.8e-07 60.8 88 31.8
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 3.7e-07 60.5 101 26.7
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 3.7e-07 60.5 129 30.2
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 4.8e-07 60.1 167 26.3
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 4.8e-07 60.1 130 24.6
Thecc.03G167900 Theobroma cacao HOM05D009258 ORTHO05D009583 4.8e-07 60.1 182 20.9
ECA246G1743 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.3e-07 59.7 192 24.5
Glyma.06G268900 Glycine max HOM05D002777 ORTHO05D001516 6.3e-07 59.7 131 29.8
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 6.3e-07 59.7 283 21.6
Sc22g0002690 Simmondsia chinensis HOM05D000043 ORTHO05D030613 6.3e-07 59.7 80 42.5
Lsat_1_v5_gn_4_126240 Lactuca sativa HOM05D008939 ORTHO05D011516 8.2e-07 59.3 134 27.6
Lj6g0012162 Lotus japonicus HOM05D002777 ORTHO05D001516 8.2e-07 59.3 200 25.0
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-06 58.9 167 25.7
DCAR_029037 Daucus carota HOM05D004122 ORTHO05D004468 1.1e-06 58.9 168 26.2
ECA232G3759 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.1e-06 58.9 183 25.7
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.1e-06 58.9 75 36.0
Actinidia26692 Actinidia chinensis HOM05D008219 ORTHO05D009356 1.4e-06 58.5 160 28.1
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.4e-06 58.5 113 28.3
Lsat_1_v5_gn_2_125141 Lactuca sativa HOM05D008939 ORTHO05D001516 1.8e-06 58.2 135 28.1
Lsat_1_v5_gn_2_8421 Lactuca sativa HOM05D008939 ORTHO05D011516 1.8e-06 58.2 134 27.6
Rhsim01G0047800 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.8e-06 58.2 140 27.9
EL10Ac1g01107 Beta vulgaris HOM05D008976 ORTHO05D011121 2.4e-06 57.8 158 24.7
Lsat_1_v5_gn_5_161261 Lactuca sativa HOM05D008939 ORTHO05D011516 2.4e-06 57.8 122 27.0
Gohir.A08G172175 Gossypium hirsutum HOM05D000003 ORTHO05D015081 3.1e-06 57.4 107 29.0
Lsat_1_v5_gn_2_49501 Lactuca sativa HOM05D003915 ORTHO05D005386 3.1e-06 57.4 140 23.6
Lj4g0023448 Lotus japonicus HOM05D002777 ORTHO05D001516 3.1e-06 57.4 185 23.8
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-06 57.0 162 23.5
EL10Ac1g00211 Beta vulgaris HOM05D008976 ORTHO05D011121 4.1e-06 57.0 146 27.4
Glyma.16G082500 Glycine max HOM05D002777 ORTHO05D001516 4.1e-06 57.0 122 28.7
Lsat_1_v5_gn_1_17180 Lactuca sativa HOM05D008939 ORTHO05D011516 4.1e-06 57.0 82 34.1
Lsat_1_v5_gn_7_46281 Lactuca sativa HOM05D008939 ORTHO05D011516 4.1e-06 57.0 102 27.5
LjContig00155g0012392 Lotus japonicus HOM05D002777 ORTHO05D001516 4.1e-06 57.0 165 25.5
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 4.1e-06 57.0 86 31.4
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 4.1e-06 57.0 233 20.6
vmacro10949 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 5.3e-06 56.6 126 27.8
DCAR_022472 Daucus carota HOM05D004122 ORTHO05D004468 7.0e-06 56.2 91 24.2
EL10Ac6g15260 Beta vulgaris HOM05D008976 ORTHO05D011121 9.1e-06 55.8 146 28.1
Lj6g0001957 Lotus japonicus HOM05D002777 ORTHO05D000006 9.1e-06 55.8 132 28.8
Medtr1g024800 Medicago truncatula HOM05D002777 ORTHO05D001516 9.1e-06 55.8 105 29.5
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 9.1e-06 55.8 242 21.5


User provided reference genes

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