Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001080 Simmondsia chinensis HOM05D001084 ORTHO05D388428 2.0e-69 265.8 143 100.0
Ah.02g126440 Amaranthus hybridus HOM05D001084 ORTHO05D001275 2.3e-14 82.8 81 53.1
AUR62008013 Chenopodium quinoa HOM05D001084 ORTHO05D001275 5.2e-14 81.6 81 54.3
EL10Ac6g14896 Beta vulgaris HOM05D001084 ORTHO05D001275 2.6e-13 79.3 81 49.4
AUR62003196 Chenopodium quinoa HOM05D001084 ORTHO05D001275 2.6e-13 79.3 81 53.1
Sc16g0001470 Simmondsia chinensis HOM05D001084 ORTHO05D001275 2.2e-12 76.3 81 54.3
Nitab4.5_0004280g0090 Nicotiana tabacum HOM05D001084 ORTHO05D001275 1.9e-11 73.2 79 51.9
Nitab4.5_0012349g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 1.9e-11 73.2 79 51.9
Peaxi162Scf00016g00102 Petunia axillaris HOM05D001084 ORTHO05D001275 1.9e-11 73.2 79 51.9
Dinv26798 Davidia involucrata HOM05D001084 ORTHO05D001275 5.4e-11 71.6 78 51.3
Sc16g0001180 Simmondsia chinensis HOM05D001084 ORTHO05D001275 5.4e-11 71.6 81 48.1
Actinidia19159 Actinidia chinensis HOM05D001084 ORTHO05D001275 7.1e-11 71.2 79 45.6
Hma1.2p1_0652F.1_g195940 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 9.2e-11 70.9 79 46.8
Dinv39946 Davidia involucrata HOM05D001084 ORTHO05D001275 1.2e-10 70.5 79 48.1
HanXRQChr14g0452271 Helianthus annuus HOM05D001084 ORTHO05D001275 2.1e-10 69.7 77 48.1
Glyma.16G141800 Glycine max HOM05D001084 ORTHO05D001275 2.7e-10 69.3 79 48.1
Lj7C11T1 Lonicera japonica HOM05D001084 ORTHO05D001275 3.5e-10 68.9 79 45.6
Cfa004264 Carpinus fangiana HOM05D001084 ORTHO05D001275 4.6e-10 68.6 81 46.9
Glyma.02G059100 Glycine max HOM05D001084 ORTHO05D001275 6.0e-10 68.2 79 46.8
Nitab4.5_0000107g0040 Nicotiana tabacum HOM05D001084 ORTHO05D001275 6.0e-10 68.2 81 49.4
CiPaw.01G032400 Carya illinoinensis HOM05D001084 ORTHO05D001275 7.8e-10 67.8 81 46.9
Nitab4.5_0002622g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 7.8e-10 67.8 81 49.4
PGSC0003DMG400037697 Solanum tuberosum HOM05D001084 ORTHO05D001275 7.8e-10 67.8 81 48.1
CiPaw.02G015000 Carya illinoinensis HOM05D001084 ORTHO05D001275 1.7e-09 66.6 81 42.0
Peaxi162Scf00078g00021 Petunia axillaris HOM05D001084 ORTHO05D001275 1.7e-09 66.6 81 46.9
Manes.13G136100 Manihot esculenta HOM05D001084 ORTHO05D001275 2.3e-09 66.2 81 45.7
CAN.G914.2 Capsicum annuum HOM05D001084 ORTHO05D001275 3.0e-09 65.9 81 48.1
FvH4_1g14080 Fragaria vesca HOM05D001084 ORTHO05D001275 3.0e-09 65.9 81 43.2
FAN19G0364 Fragaria x ananassa HOM05D001084 ORTHO05D001275 3.0e-09 65.9 81 43.2
Lj5P200T42 Lonicera japonica HOM05D001084 ORTHO05D001275 3.0e-09 65.9 79 46.8
Potri.007G031200 Populus trichocarpa HOM05D001084 ORTHO05D001275 3.0e-09 65.9 79 46.8
Cpa.g.sc158.19 Carica papaya HOM05D001084 ORTHO05D001275 3.9e-09 65.5 81 43.2
DCAR_007517 Daucus carota HOM05D001084 ORTHO05D001275 3.9e-09 65.5 79 44.3
Migut.K00856 Erythranthe guttata HOM05D001084 ORTHO05D001275 3.9e-09 65.5 79 43.0
unitig_62.g23400 Utricularia gibba HOM05D001084 ORTHO05D001275 3.9e-09 65.5 79 46.8
Potri.004G150800 Populus trichocarpa HOM05D001084 ORTHO05D001275 5.1e-09 65.1 79 46.8
SalBow1G0930 Salvia bowleyana HOM05D001084 ORTHO05D001275 5.1e-09 65.1 79 39.2
Cc07_g05110 Coffea canephora HOM05D001084 ORTHO05D001275 6.6e-09 64.7 81 43.2
ECA238G0922 Erigeron canadensis HOM05D001084 ORTHO05D001275 6.6e-09 64.7 89 39.3
Eucgr.I02475 Eucalyptus grandis HOM05D001084 ORTHO05D001275 6.6e-09 64.7 81 44.4
PGR119G0674 Punica granatum HOM05D001084 ORTHO05D001275 6.6e-09 64.7 81 43.2
QL06p044956 Quercus lobata HOM05D001084 ORTHO05D001275 6.6e-09 64.7 81 44.4
TPR.G20277 Trifolium pratense HOM05D001084 ORTHO05D001275 6.6e-09 64.7 81 46.9
Haze_15137 Corylus avellana HOM05D001084 ORTHO05D001275 8.6e-09 64.3 81 43.2
MD02G1154800 Malus domestica HOM05D001084 ORTHO05D001275 8.6e-09 64.3 81 43.2
VMungo1215G2091 Vigna mungo HOM05D001084 ORTHO05D001275 8.6e-09 64.3 81 45.7
Lsat_1_v5_gn_4_175700 Lactuca sativa HOM05D001084 ORTHO05D001275 1.1e-08 63.9 79 44.3
ClCG09G017820 Citrullus lanatus HOM05D001084 ORTHO05D001275 1.5e-08 63.5 98 38.8
Lalb_Chr05g0213001 Lupinus albus HOM05D001084 ORTHO05D001275 1.5e-08 63.5 81 45.7
MD15G1269200 Malus domestica HOM05D001084 ORTHO05D001275 1.5e-08 63.5 81 42.0
Medtr8g078100 Medicago truncatula HOM05D001084 ORTHO05D001275 1.5e-08 63.5 79 46.8
Psat2g162280 Pisum sativum HOM05D001084 ORTHO05D001275 1.5e-08 63.5 81 44.4
Solyc11g039740.3 Solanum lycopersicum HOM05D001084 ORTHO05D001275 1.9e-08 63.2 81 45.7
Sopen11g015460 Solanum pennellii HOM05D001084 ORTHO05D001275 1.9e-08 63.2 81 45.7
Thecc.01G041800 Theobroma cacao HOM05D001084 ORTHO05D001275 1.9e-08 63.2 81 44.4
BcaB07g31653 Brassica carinata HOM05D001084 ORTHO05D001275 2.5e-08 62.8 81 43.2
Ca_26382_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 2.5e-08 62.8 79 44.3
FAN23G1338 Fragaria x ananassa HOM05D001084 ORTHO05D001275 2.5e-08 62.8 81 42.0
FAN26G2905 Fragaria x ananassa HOM05D001084 ORTHO05D001275 2.5e-08 62.8 81 42.0
TWI75G0560 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 2.5e-08 62.8 79 45.6
AL8G44810 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 3.3e-08 62.4 81 44.4
MSTRG.3391 Avicennia marina HOM05D001084 ORTHO05D001275 3.3e-08 62.4 76 46.1
Lsat_1_v5_gn_2_86760 Lactuca sativa HOM05D001084 ORTHO05D001275 3.3e-08 62.4 77 44.2
Prupe.7G148500 Prunus persica HOM05D001084 ORTHO05D001275 3.3e-08 62.4 78 42.3
Aa31LG8G15440 Aethionema arabicum HOM05D001084 ORTHO05D001275 4.3e-08 62.0 81 44.4
AT4G34330 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 4.3e-08 62.0 77 48.1
Ca_24831_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 4.3e-08 62.0 81 42.0
Ciclev10025839m.g Citrus clementina HOM05D001084 ORTHO05D001275 4.3e-08 62.0 81 43.2
MELO3C021948.2 Cucumis melo HOM05D001084 ORTHO05D001275 4.3e-08 62.0 98 37.8
Psat4g091120 Pisum sativum HOM05D001084 ORTHO05D001275 4.3e-08 62.0 79 45.6
Sc16g0001310 Simmondsia chinensis HOM05D038590 ORTHO05D012434 4.3e-08 62.0 54 64.8
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 5.6e-08 61.6 79 45.6
Ca_12488_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 5.6e-08 61.6 79 45.6
Ca_12493_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 5.6e-08 61.6 79 45.6
Lj4g0017599 Lotus japonicus HOM05D001084 ORTHO05D001275 5.6e-08 61.6 79 44.3
Medtr5g019430 Medicago truncatula HOM05D001084 ORTHO05D001275 5.6e-08 61.6 81 42.0
Sc16g0001100 Simmondsia chinensis HOM05D038590 ORTHO05D012434 5.6e-08 61.6 57 59.6
THA.LOC104826854 Tarenaya hassleriana HOM05D001084 ORTHO05D001275 5.6e-08 61.6 81 42.0
CsaV3_2G014410 Cucumis sativus L. HOM05D001084 ORTHO05D001275 7.3e-08 61.2 98 37.8
FAN28G2585 Fragaria x ananassa HOM05D001084 ORTHO05D001275 7.3e-08 61.2 81 40.7
RcHm_v2.0_Chr2g0102731 Rosa chinensis HOM05D001084 ORTHO05D001275 7.3e-08 61.2 81 40.7
Migut.H00526 Erythranthe guttata HOM05D001084 ORTHO05D001275 9.5e-08 60.8 79 40.5
BcaC04g22894 Brassica carinata HOM05D001084 ORTHO05D001275 1.2e-07 60.5 81 40.7
C09p14140 Brassica napus HOM05D001084 ORTHO05D001275 1.2e-07 60.5 81 40.7
BolC9t54311H Brassica oleracea HOM05D001084 ORTHO05D001275 1.2e-07 60.5 81 40.7
Oeu038871.1 Olea europaea HOM05D001084 ORTHO05D001275 1.2e-07 60.5 79 40.5
Sabra04G0100300 Salix brachista HOM05D001084 ORTHO05D001275 1.2e-07 60.5 79 44.3
TPR.G23217 Trifolium pratense HOM05D001084 ORTHO05D001275 1.2e-07 60.5 81 42.0
AT5G66675 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 42.0
BcaC06g36440 Brassica carinata HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 40.7
A07p02020 Brassica napus HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 40.7
C07p04110 Brassica napus HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 40.7
BolC7t40807H Brassica oleracea HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 40.7
BraA07t27999Z Brassica rapa HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 40.7
Glyma.01G178400 Glycine max HOM05D001084 ORTHO05D001275 1.6e-07 60.1 81 42.0
Lj1g0023568 Lotus japonicus HOM05D001084 ORTHO05D001275 1.6e-07 60.1 72 47.2
Sabra07G0027100 Salix brachista HOM05D001084 ORTHO05D001275 1.6e-07 60.1 79 44.3
BcaB03g16654 Brassica carinata HOM05D001084 ORTHO05D001275 2.1e-07 59.7 81 39.5
CARHR109220 Cardamine hirsuta HOM05D001084 ORTHO05D001275 2.1e-07 59.7 81 38.3
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 2.1e-07 59.7 81 39.5
A09p12010 Brassica napus HOM05D001084 ORTHO05D001275 2.8e-07 59.3 81 39.5
Duzib187G0021 Durio zibethinus HOM05D001084 ORTHO05D001275 2.8e-07 59.3 81 40.7
PGR102G0101 Punica granatum HOM05D001084 ORTHO05D001275 2.8e-07 59.3 78 43.6
Sp3g32120 Schrenkiella parvula HOM05D001084 ORTHO05D001275 2.8e-07 59.3 81 40.7
AUR62016703 Chenopodium quinoa HOM05D001084 ORTHO05D001275 3.6e-07 58.9 79 44.3
Dinv23554 Davidia involucrata HOM05D001084 ORTHO05D001275 3.6e-07 58.9 72 45.8
Thhalv10022714m.g Eutrema salsugineum HOM05D001084 ORTHO05D001275 3.6e-07 58.9 81 39.5
Lalb_Chr09g0322661 Lupinus albus HOM05D001084 ORTHO05D001275 3.6e-07 58.9 81 43.2
Sc16g0001400 Simmondsia chinensis HOM05D038590 ORTHO05D012434 3.6e-07 58.9 61 55.7
Atru.chr3.511 Acer truncatum HOM05D001084 ORTHO05D001275 4.7e-07 58.5 79 43.0
BraA09t36844Z Brassica rapa HOM05D001084 ORTHO05D001275 4.7e-07 58.5 81 39.5
COL.COLO4_22143 Corchorus olitorius HOM05D001084 ORTHO05D001275 4.7e-07 58.5 81 39.5
Gorai.003G016900 Gossypium raimondii HOM05D001084 ORTHO05D001275 4.7e-07 58.5 81 43.2
Lj2g0009408 Lotus japonicus HOM05D001084 ORTHO05D001275 4.7e-07 58.5 81 40.7
Actinidia00499 Actinidia chinensis HOM05D001084 ORTHO05D001275 6.2e-07 58.2 79 44.3
AL3G51980 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 37.0
AT2G18630 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 37.0
CANSAT01G1019 Cannabis sativa HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 40.7
Carub.0003s3289 Capsella rubella HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 37.0
Carub.0008s2783 Capsella rubella HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 40.7
Glyma.11G063800 Glycine max HOM05D001084 ORTHO05D001275 6.2e-07 58.2 81 42.0
Manes.15G148300 Manihot esculenta HOM05D001084 ORTHO05D001275 6.2e-07 58.2 79 44.3
Duzib147G0971 Durio zibethinus HOM05D001084 ORTHO05D001275 8.1e-07 57.8 81 43.2
Gohir.A02G163500 Gossypium hirsutum HOM05D001084 ORTHO05D001275 8.1e-07 57.8 81 43.2
THA.LOC104807331 Tarenaya hassleriana HOM05D001084 ORTHO05D001275 8.1e-07 57.8 79 45.6
Duzib264G0043 Durio zibethinus HOM05D001084 ORTHO05D001275 1.1e-06 57.4 81 38.3
SGA_v2.0_scaffold204G41646 Striga asiatica HOM05D001084 ORTHO05D001275 1.1e-06 57.4 79 38.0
CAN.G322.110 Capsicum annuum HOM05D001084 ORTHO05D001275 1.4e-06 57.0 79 44.3
Gohir.A12G066100 Gossypium hirsutum HOM05D001084 ORTHO05D001275 1.4e-06 57.0 81 39.5
Gohir.D03G016700 Gossypium hirsutum HOM05D001084 ORTHO05D001275 1.4e-06 57.0 81 43.2
Lj2g0019081 Lotus japonicus HOM05D001084 ORTHO05D001275 1.4e-06 57.0 79 43.0
Phvul.003G010400 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 1.4e-06 57.0 79 40.5
Sp2g30030 Schrenkiella parvula HOM05D001084 ORTHO05D001275 1.4e-06 57.0 81 37.0
Eucgr.L03393 Eucalyptus grandis HOM05D001084 ORTHO05D001275 1.8e-06 56.6 81 43.2
Gohir.D12G066500 Gossypium hirsutum HOM05D001084 ORTHO05D001275 1.8e-06 56.6 81 39.5
TWI73G0528 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 2.4e-06 56.2 81 39.5
CDE04G2931 Ceratophyllum demersum HOM05D001084 ORTHO05D001275 3.1e-06 55.8 79 40.5
Gorai.008G069800 Gossypium raimondii HOM05D001084 ORTHO05D001275 3.1e-06 55.8 81 38.3
Solyc01g109380.3 Solanum lycopersicum HOM05D001084 ORTHO05D001275 3.1e-06 55.8 79 43.0
Sopen01g051570 Solanum pennellii HOM05D001084 ORTHO05D001275 3.1e-06 55.8 79 43.0
PGSC0003DMG400025185 Solanum tuberosum HOM05D001084 ORTHO05D001275 3.1e-06 55.8 79 43.0
AUR62011358 Chenopodium quinoa HOM05D001084 ORTHO05D001275 4.0e-06 55.5 79 43.0
Eucgr.H01234 Eucalyptus grandis HOM05D001084 ORTHO05D001275 4.0e-06 55.5 81 43.2
BcaB04g20112 Brassica carinata HOM05D001084 ORTHO05D001275 5.2e-06 55.1 81 38.3
Eucgr.H01233 Eucalyptus grandis HOM05D001084 ORTHO05D001275 5.2e-06 55.1 81 42.0
Manes.12G098700 Manihot esculenta HOM05D001084 ORTHO05D001275 5.2e-06 55.1 81 44.4
Phvul.002G026300 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 5.2e-06 55.1 81 40.7
SHI05436 Sapria himalayana HOM05D001084 ORTHO05D001275 5.2e-06 55.1 79 40.5
COL.COLO4_32460 Corchorus olitorius HOM05D001084 ORTHO05D001275 6.8e-06 54.7 79 41.8
Thhalv10004318m.g Eutrema salsugineum HOM05D001084 ORTHO05D001275 6.8e-06 54.7 81 37.0
Sed0014401 Sechium edule HOM05D001084 ORTHO05D001275 6.8e-06 54.7 96 36.5
Oeu003715.1 Olea europaea HOM05D001084 ORTHO05D001275 8.9e-06 54.3 56 50.0


User provided reference genes

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