Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0001070 Simmondsia chinensis HOM05D000264 ORTHO05D000152 1.8e-117 426.0 223 100.0
Sc16g0001300 Simmondsia chinensis HOM05D000264 ORTHO05D000152 3.2e-34 149.4 213 47.9
Sc16g0001090 Simmondsia chinensis HOM05D000264 ORTHO05D000152 3.4e-28 129.4 232 43.5
Sc16g0001410 Simmondsia chinensis HOM05D000264 ORTHO05D000152 2.1e-25 120.2 223 41.7
CSS0014264 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 1.5e-15 87.4 215 34.0
QL01p006033 Quercus lobata HOM05D000264 ORTHO05D000152 3.3e-15 86.3 234 32.9
Sc16g0001320 Simmondsia chinensis HOM05D000264 ORTHO05D000152 4.3e-15 85.9 90 50.0
EL10Ac6g14901 Beta vulgaris HOM05D000264 ORTHO05D000152 2.8e-14 83.2 111 41.4
Hund18035 Selenicereus undatus HOM05D000264 ORTHO05D000152 4.8e-14 82.4 150 38.0
QL01p006014 Quercus lobata HOM05D000264 ORTHO05D000152 6.2e-14 82.0 144 38.9
Sc07g0003550 Simmondsia chinensis HOM05D000264 ORTHO05D000152 6.2e-14 82.0 213 32.4
GSVIVG01030362001 Vitis vinifera HOM05D000264 ORTHO05D000152 6.2e-14 82.0 220 32.3
QL02p056100 Quercus lobata HOM05D000264 ORTHO05D000152 1.1e-13 81.3 220 33.2
QL05p018838 Quercus lobata HOM05D000264 ORTHO05D000152 1.1e-13 81.3 220 33.2
QL05p018975 Quercus lobata HOM05D000264 ORTHO05D000152 1.1e-13 81.3 220 32.7
AUR62008009 Chenopodium quinoa HOM05D000264 ORTHO05D000152 1.4e-13 80.9 202 31.7
Rhsim06G0144100 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.4e-13 80.9 218 32.1
AT4G03460 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 1.8e-13 80.5 214 33.6
GSVIVG01020519001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.8e-13 80.5 220 31.8
GSVIVG01030371001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.4e-13 80.1 220 31.8
GSVIVG01030360001 Vitis vinifera HOM05D000264 ORTHO05D000152 3.1e-13 79.7 220 32.3
Migut.H01079 Erythranthe guttata HOM05D000264 ORTHO05D000152 6.9e-13 78.6 214 34.6
Rhsim06G0145000 Rhododendron simsii HOM05D000264 ORTHO05D000152 6.9e-13 78.6 181 35.4
GSVIVG01030367001 Vitis vinifera HOM05D000264 ORTHO05D000152 6.9e-13 78.6 222 31.5
Migut.H01080 Erythranthe guttata HOM05D000264 ORTHO05D000152 9.0e-13 78.2 212 30.2
Rhsim06G0144200 Rhododendron simsii HOM05D000264 ORTHO05D000152 9.0e-13 78.2 181 35.4
vmacro12293 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 9.0e-13 78.2 219 32.4
vmacro12290 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.5e-12 77.4 219 31.1
vmacro22812 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 1.5e-12 77.4 222 31.1
Sc06g0005980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 2.0e-12 77.0 217 29.5
GSVIVG01030366001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.0e-12 77.0 219 31.5
Dinv02171 Davidia involucrata HOM05D000264 ORTHO05D000152 2.6e-12 76.6 104 44.2
Rhsim06G0144500 Rhododendron simsii HOM05D000264 ORTHO05D000152 2.6e-12 76.6 177 35.6
GSVIVG01030372001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.6e-12 76.6 173 37.0
Dinv02176 Davidia involucrata HOM05D000264 ORTHO05D000152 4.5e-12 75.9 222 32.9
Dinv01341 Davidia involucrata HOM05D000264 ORTHO05D000152 5.8e-12 75.5 222 32.9
Hma1.2p1_0213F.1_g090350 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 5.8e-12 75.5 219 33.3
TAR624G0104 Trochodendron aralioides HOM05D000264 ORTHO05D000152 5.8e-12 75.5 184 30.4
AUR62003189 Chenopodium quinoa HOM05D000264 ORTHO05D000152 7.6e-12 75.1 207 30.9
Dinv26423 Davidia involucrata HOM05D000264 ORTHO05D000152 7.6e-12 75.1 215 32.6
QL05p018909 Quercus lobata HOM05D000264 ORTHO05D000152 1.0e-11 74.7 137 38.0
CSS0035240 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 1.3e-11 74.3 215 31.2
Hund16575 Selenicereus undatus HOM05D000264 ORTHO05D000152 1.3e-11 74.3 211 28.9
QL04p024009 Quercus lobata HOM05D000264 ORTHO05D000152 1.7e-11 73.9 182 33.0
Ah.15g093680 Amaranthus hybridus HOM05D000264 ORTHO05D000152 2.2e-11 73.6 178 34.3
BraA03t12224Z Brassica rapa HOM05D000264 ORTHO05D000152 2.2e-11 73.6 215 34.4
BcaB01g02537 Brassica carinata HOM05D000264 ORTHO05D000152 2.9e-11 73.2 213 31.5
BraA10t42486Z Brassica rapa HOM05D000264 ORTHO05D000152 2.9e-11 73.2 190 33.2
Carub.0006s3361 Capsella rubella HOM05D000264 ORTHO05D000152 2.9e-11 73.2 212 30.7
QL04p023639 Quercus lobata HOM05D000264 ORTHO05D000152 2.9e-11 73.2 182 33.0
GSVIVG01020524001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.9e-11 73.2 220 32.3
Actinidia11043 Actinidia chinensis HOM05D000264 ORTHO05D000152 3.8e-11 72.8 218 32.1
Rhsim06G0144700 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.8e-11 72.8 218 33.0
Rhsim06G0145400 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.8e-11 72.8 218 33.0
vmacro12288 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 3.8e-11 72.8 221 33.5
GSVIVG01030363001 Vitis vinifera HOM05D000264 ORTHO05D000152 3.8e-11 72.8 218 30.3
Ah.01g022500 Amaranthus hybridus HOM05D000264 ORTHO05D000152 4.9e-11 72.4 131 35.1
EL10Ac4g07662 Beta vulgaris HOM05D000264 ORTHO05D000152 4.9e-11 72.4 153 34.6
CSS0028437 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 4.9e-11 72.4 216 32.4
Lj1C726T14 Lonicera japonica HOM05D000264 ORTHO05D000152 6.5e-11 72.0 214 32.7
VMungo1080G1027 Vigna mungo HOM05D000264 ORTHO05D000152 6.5e-11 72.0 183 30.6
Aa31LG5G2890 Aethionema arabicum HOM05D000264 ORTHO05D000152 8.4e-11 71.6 211 30.8
AT4G03500 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 8.4e-11 71.6 223 31.4
AUR62020785 Chenopodium quinoa HOM05D000264 ORTHO05D000152 8.4e-11 71.6 152 34.9
Cc05_g07000 Coffea canephora HOM05D000264 ORTHO05D000152 8.4e-11 71.6 222 31.1
Nn1g06590 Nelumbo nucifera HOM05D000264 ORTHO05D000152 8.4e-11 71.6 181 32.0
Ah.15g093670 Amaranthus hybridus HOM05D000264 ORTHO05D000152 1.1e-10 71.2 179 34.1
QL08p039639 Quercus lobata HOM05D000264 ORTHO05D000152 1.1e-10 71.2 210 31.4
Rhsim06G0145300 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.1e-10 71.2 215 32.1
TAR624G1302 Trochodendron aralioides HOM05D000264 ORTHO05D000152 1.1e-10 71.2 184 32.1
FAN18G1722 Fragaria x ananassa HOM05D000264 ORTHO05D000152 1.4e-10 70.9 208 30.3
GSVIVG01030361001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.4e-10 70.9 218 29.8
Ah.01g022540 Amaranthus hybridus HOM05D000264 ORTHO05D000152 1.9e-10 70.5 131 34.4
Prupe.3G135100 Prunus persica HOM05D000264 ORTHO05D000152 1.9e-10 70.5 136 33.8
Thecc.02G180600 Theobroma cacao HOM05D000264 ORTHO05D000152 1.9e-10 70.5 215 32.1
TWI36G1112 Tripterygium wilfordii HOM05D000264 ORTHO05D000152 1.9e-10 70.5 214 31.3
FvH4_3g05910 Fragaria vesca HOM05D000264 ORTHO05D000152 2.5e-10 70.1 179 33.5
Sc07g0003530 Simmondsia chinensis HOM05D000264 ORTHO05D000152 2.5e-10 70.1 116 41.4
Ah.03g134300 Amaranthus hybridus HOM05D000264 ORTHO05D000152 4.2e-10 69.3 140 33.6
Ah.15g093690 Amaranthus hybridus HOM05D000264 ORTHO05D000152 4.2e-10 69.3 123 37.4
BcaC01g06675 Brassica carinata HOM05D000264 ORTHO05D000152 4.2e-10 69.3 212 30.7
C03p36730 Brassica napus HOM05D000264 ORTHO05D000152 4.2e-10 69.3 212 30.7
BolC3t15987H Brassica oleracea HOM05D000264 ORTHO05D000152 4.2e-10 69.3 212 30.7
AUR62003194 Chenopodium quinoa HOM05D000264 ORTHO05D000152 4.2e-10 69.3 220 31.4
QL01p018981 Quercus lobata HOM05D000264 ORTHO05D000152 4.2e-10 69.3 180 29.4
Rhsim06G0144600 Rhododendron simsii HOM05D000264 ORTHO05D000152 4.2e-10 69.3 218 32.1
Rhsim06G0145700 Rhododendron simsii HOM05D000264 ORTHO05D000152 4.2e-10 69.3 80 51.2
AUR62027914 Chenopodium quinoa HOM05D000264 ORTHO05D000152 5.5e-10 68.9 152 34.9
A02p37150 Brassica napus HOM05D000264 ORTHO05D000152 7.1e-10 68.6 170 34.7
BraA02t08701Z Brassica rapa HOM05D000264 ORTHO05D000152 7.1e-10 68.6 170 34.7
CSS0018607 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 7.1e-10 68.6 188 29.3
AUR62044282 Chenopodium quinoa HOM05D000264 ORTHO05D000152 7.1e-10 68.6 152 34.9
ECA246G1346 Erigeron canadensis HOM05D000264 ORTHO05D000152 7.1e-10 68.6 201 32.3
GSVIVG01020517001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.1e-10 68.6 214 29.4
CARHR251900 Cardamine hirsuta HOM05D000264 ORTHO05D000001 9.3e-10 68.2 214 32.2
CSS0000780 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 1.2e-09 67.8 218 28.9
DCAR_014775 Daucus carota HOM05D000264 ORTHO05D000152 1.2e-09 67.8 176 29.5
Actinidia11041 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.6e-09 67.4 170 33.5
AT1G03670 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 1.6e-09 67.4 216 30.6
Phvul.005G046201 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 2.1e-09 67.0 191 27.2
RcHm_v2.0_Chr3g0461161 Rosa chinensis HOM05D000264 ORTHO05D000152 2.1e-09 67.0 192 32.3
CSS0049254 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 2.7e-09 66.6 225 30.2
Sc06g0006110 Simmondsia chinensis HOM05D000264 ORTHO05D000152 4.6e-09 65.9 219 28.3
BcaB01g01946 Brassica carinata HOM05D000264 ORTHO05D000152 6.0e-09 65.5 219 30.1
Cc05_g06990 Coffea canephora HOM05D000264 ORTHO05D000152 6.0e-09 65.5 178 31.5
TWI36G0414 Tripterygium wilfordii HOM05D000264 ORTHO05D000152 6.0e-09 65.5 139 31.7
BcaC03g17617 Brassica carinata HOM05D000264 ORTHO05D000152 7.9e-09 65.1 213 31.5
BolC2t11673H Brassica oleracea HOM05D000264 ORTHO05D000152 7.9e-09 65.1 213 31.5
Oeu048152.1 Olea europaea HOM05D000264 ORTHO05D000152 7.9e-09 65.1 176 30.7
Prupe.3G135200 Prunus persica HOM05D000264 ORTHO05D000152 7.9e-09 65.1 113 37.2
Rhsim06G0145100 Rhododendron simsii HOM05D000264 ORTHO05D000152 7.9e-09 65.1 220 30.0
Sc12g0002980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 1.0e-08 64.7 142 35.9
Actinidia11042 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.3e-08 64.3 170 31.2
HanXRQChr06g0174631 Helianthus annuus HOM05D000264 ORTHO05D000152 1.3e-08 64.3 175 33.7
RcHm_v2.0_Chr5g0041111 Rosa chinensis HOM05D000264 ORTHO05D000152 1.3e-08 64.3 180 29.4
BolC9t53211H Brassica oleracea HOM05D000264 ORTHO05D000152 1.8e-08 63.9 219 30.1
Dinv02172 Davidia involucrata HOM05D000264 ORTHO05D000152 1.8e-08 63.9 204 28.9
CARHR251860 Cardamine hirsuta HOM05D000264 ORTHO05D000152 2.3e-08 63.5 220 29.5
Phvul.005G046600 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 2.3e-08 63.5 184 27.2
Cpa.g.sc34.145 Carica papaya HOM05D000264 ORTHO05D000152 3.0e-08 63.2 140 31.4
Phvul.005G046300 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 3.0e-08 63.2 195 28.7
Prupe.3G153800 Prunus persica HOM05D000264 ORTHO05D000152 3.0e-08 63.2 126 34.9
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 3.0e-08 63.2 215 30.2
vmacro22811 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 3.0e-08 63.2 215 30.2
VMungo1080G0715 Vigna mungo HOM05D000264 ORTHO05D000152 3.0e-08 63.2 183 27.3
GSVIVG01020530001 Vitis vinifera HOM05D000264 ORTHO05D000152 3.0e-08 63.2 172 33.7
THA.LOC104801174 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 3.9e-08 62.8 188 31.4
BcaC04g23970 Brassica carinata HOM05D000264 ORTHO05D000152 5.1e-08 62.4 219 29.7
C09p02850 Brassica napus HOM05D000264 ORTHO05D000152 5.1e-08 62.4 219 29.7
Dinv01345 Davidia involucrata HOM05D000264 ORTHO05D000152 5.1e-08 62.4 105 40.0
C02p56170 Brassica napus HOM05D000264 ORTHO05D000152 6.7e-08 62.0 213 31.0
GSVIVG01020527001 Vitis vinifera HOM05D000264 ORTHO05D000152 6.7e-08 62.0 219 28.3
Dinv23656 Davidia involucrata HOM05D000264 ORTHO05D000152 8.7e-08 61.6 141 37.6
Lalb_Chr20g0108371 Lupinus albus HOM05D000264 ORTHO05D000152 1.5e-07 60.8 187 28.9
Rhsim06G0144300 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.5e-07 60.8 220 29.5
Sp6g04290 Schrenkiella parvula HOM05D000264 ORTHO05D000152 1.5e-07 60.8 212 29.2
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 1.5e-07 60.8 151 31.1
Migut.D00741 Erythranthe guttata HOM05D000264 ORTHO05D000152 1.9e-07 60.5 173 32.9
MBI02_g34319_MAGBIO Magnolia biondii HOM05D000264 ORTHO05D000152 1.9e-07 60.5 139 33.8
Phvul.005G046400 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 1.9e-07 60.5 193 26.4
AT4G03490 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 2.5e-07 60.1 221 30.3
Eucgr.C03969 Eucalyptus grandis HOM05D000264 ORTHO05D000152 2.5e-07 60.1 104 41.3
MD12G1218700 Malus domestica HOM05D000264 ORTHO05D000152 2.5e-07 60.1 216 30.6
Cpa.g.sc34.146 Carica papaya HOM05D000264 ORTHO05D000152 3.3e-07 59.7 164 31.1
Lj2g0023266 Lotus japonicus HOM05D000264 ORTHO05D000152 3.3e-07 59.7 179 30.2
Carub.0006s3362 Capsella rubella HOM05D000264 ORTHO05D000152 4.3e-07 59.3 124 32.3
CARHR002990 Cardamine hirsuta HOM05D000264 ORTHO05D000152 4.3e-07 59.3 215 30.2
Thhalv10002443m.g Eutrema salsugineum HOM05D000264 ORTHO05D000152 4.3e-07 59.3 218 28.9
Eucgr.K00672 Eucalyptus grandis HOM05D000264 ORTHO05D000152 5.7e-07 58.9 121 30.6
Eucgr.K01008 Eucalyptus grandis HOM05D000264 ORTHO05D000152 5.7e-07 58.9 150 32.7
Prupe.8G110300 Prunus persica HOM05D000264 ORTHO05D000152 5.7e-07 58.9 189 32.3
Eucgr.K00982 Eucalyptus grandis HOM05D000264 ORTHO05D000152 7.4e-07 58.5 143 35.0
Eucgr.L02762 Eucalyptus grandis HOM05D000264 ORTHO05D000152 7.4e-07 58.5 112 33.9
Ah.11g050920 Amaranthus hybridus HOM05D005485 ORTHO05D000152 1.3e-06 57.8 96 37.5
COL.COLO4_30202 Corchorus olitorius HOM05D000264 ORTHO05D000152 1.3e-06 57.8 169 30.8
Sp6g03500 Schrenkiella parvula HOM05D000264 ORTHO05D000152 1.3e-06 57.8 204 32.8
Eucgr.A00187 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.6e-06 57.4 143 31.5
Phvul.005G047150 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 1.6e-06 57.4 185 26.5
TWI36G0228 Tripterygium wilfordii HOM05D000264 ORTHO05D000152 1.6e-06 57.4 184 28.8
Zm00001eb215410 Zea mays HOM05D000264 ORTHO05D000152 1.6e-06 57.4 99 34.3
arahy.Tifrunner.gnm1.ann1.87J5U8 Arachis hypogaea HOM05D000264 ORTHO05D000152 2.1e-06 57.0 154 29.9
Ah.06g182180 Amaranthus hybridus HOM05D005485 ORTHO05D007343 2.8e-06 56.6 130 32.3
BcaB02g06911 Brassica carinata HOM05D000264 ORTHO05D000152 2.8e-06 56.6 177 29.4
A09p02790 Brassica napus HOM05D000264 ORTHO05D000152 2.8e-06 56.6 127 32.3
C03p36720 Brassica napus HOM05D000264 ORTHO05D000152 3.7e-06 56.2 172 31.4
BolC3t15986H Brassica oleracea HOM05D000264 ORTHO05D000152 3.7e-06 56.2 172 31.4
Lj2g0018878 Lotus japonicus HOM05D000264 ORTHO05D000152 3.7e-06 56.2 187 29.4
TWI36G1297 Tripterygium wilfordii HOM05D000264 ORTHO05D000152 3.7e-06 56.2 169 27.8
BcaB07g30051 Brassica carinata HOM05D000264 ORTHO05D000152 4.8e-06 55.8 214 30.8
BcaC04g23968 Brassica carinata HOM05D000264 ORTHO05D000152 4.8e-06 55.8 127 31.5
BcaB01g01945 Brassica carinata HOM05D000264 ORTHO05D000152 6.3e-06 55.5 127 32.3
BraA03t12223Z Brassica rapa HOM05D000264 ORTHO05D000152 6.3e-06 55.5 172 31.4
CARHR251850 Cardamine hirsuta HOM05D000264 ORTHO05D000152 6.3e-06 55.5 144 34.7
CsaV3_3G023710 Cucumis sativus L. HOM05D000454 ORTHO05D002637 6.3e-06 55.5 144 30.6
Eucgr.K01013 Eucalyptus grandis HOM05D000264 ORTHO05D000152 6.3e-06 55.5 104 39.4
Thhalv10028485m.g Eutrema salsugineum HOM05D000264 ORTHO05D000152 6.3e-06 55.5 188 31.4
BolC9t53212H Brassica oleracea HOM05D000264 ORTHO05D000152 8.2e-06 55.1 127 31.5
AUR62005064 Chenopodium quinoa HOM05D005485 ORTHO05D007343 8.2e-06 55.1 98 34.7
Os11g0434850 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 8.2e-06 55.1 112 34.8
Phvul.005G047000 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 8.2e-06 55.1 185 26.5


User provided reference genes

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