Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 2.4e-38 161.8 85 100.0
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 4.5e-37 157.5 83 97.6
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 5.8e-37 157.1 84 95.2
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 5.8e-37 157.1 83 96.4
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 9.9e-37 156.4 83 96.4
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 1.3e-36 156.0 84 94.0
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 1.3e-36 156.0 84 94.0
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 2.2e-36 155.2 84 94.0
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 2.2e-36 155.2 83 95.2
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 2.9e-36 154.8 85 92.9
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 3.8e-36 154.5 85 92.9
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 3.8e-36 154.5 84 92.9
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.8e-36 154.5 83 96.4
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 6.4e-36 153.7 83 95.2
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 6.4e-36 153.7 83 95.2
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 6.4e-36 153.7 84 91.7
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 6.4e-36 153.7 85 92.9
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 6.4e-36 153.7 83 95.2
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 8.4e-36 153.3 83 95.2
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 8.4e-36 153.3 83 94.0
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 8.4e-36 153.3 83 94.0
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 1.1e-35 152.9 83 94.0
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 1.1e-35 152.9 83 94.0
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 92.8
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 1.4e-35 152.5 83 94.0
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.9e-35 152.1 83 92.8
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 2.4e-35 151.8 83 94.0
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 3.2e-35 151.4 83 92.8
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 3.2e-35 151.4 82 93.9
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 3.2e-35 151.4 81 96.3
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 3.2e-35 151.4 83 92.8
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 4.2e-35 151.0 83 92.8
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 4.2e-35 151.0 83 92.8
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 4.2e-35 151.0 83 91.6
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 5.4e-35 150.6 83 92.8
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 5.4e-35 150.6 83 90.4
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 7.1e-35 150.2 83 91.6
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 9.3e-35 149.8 83 92.8
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.2e-34 149.4 83 90.4
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 1.6e-34 149.1 85 90.6
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 2.7e-34 148.3 82 91.5
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 2.7e-34 148.3 83 90.4
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 2.7e-34 148.3 83 89.2
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 3.5e-34 147.9 84 91.7
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 3.5e-34 147.9 84 91.7
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 3.5e-34 147.9 84 91.7
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 3.5e-34 147.9 84 91.7
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 3.5e-34 147.9 84 91.7
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 4.6e-34 147.5 83 91.6
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 1.3e-33 146.0 83 86.7
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 1.1e-32 142.9 85 87.1
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 1.1e-32 142.9 85 87.1
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 4.3e-32 141.0 83 84.3
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 2.8e-31 138.3 90 81.1
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 3.1e-30 134.8 83 80.7
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 4.0e-30 134.4 78 88.5
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 6.9e-30 133.7 72 93.1
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 1.2e-29 132.9 72 93.1
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 1.5e-29 132.5 85 77.6
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 3.4e-29 131.3 73 91.8
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 4.9e-28 127.5 82 81.7
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 4.9e-28 127.5 82 81.7
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 4.9e-28 127.5 83 83.1
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 1.4e-27 125.9 73 89.0
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 1.9e-27 125.6 71 87.3
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 3.2e-27 124.8 83 77.1
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 3.2e-27 124.8 83 77.1
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 3.2e-27 124.8 83 77.1
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 5.5e-27 124.0 83 77.1
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 7.1e-27 123.6 73 84.9
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 1.2e-26 122.9 83 75.9
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.6e-26 122.5 83 75.9
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 4.6e-26 120.9 83 77.1
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 1.0e-25 119.8 90 71.1
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 1.3e-25 119.4 87 73.6
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 2.9e-20 101.7 71 70.4
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 8.4e-20 100.1 72 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 1.1e-19 99.8 76 61.8
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.7e-18 95.1 83 63.9
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 6.7e-17 90.5 64 75.0
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 4.3e-16 87.8 69 58.0
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 5.7e-16 87.4 48 93.8
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 9.7e-16 86.7 44 93.2
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 7.7e-13 77.0 46 76.1
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.3e-12 76.3 70 58.6
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 2.3e-09 65.5 64 42.2
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 6.3e-07 57.4 33 81.8


User provided reference genes

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