Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 4.2e-147 524.6 260 100.0
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 2.2e-95 352.8 223 79.4
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.8e-95 352.1 247 74.1
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 1.4e-94 350.1 222 76.1
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 4.2e-94 348.6 229 74.2
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 7.1e-94 347.8 235 73.6
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 1.6e-93 346.7 224 76.3
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 1.6e-93 346.7 225 76.9
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 1.6e-93 346.7 225 76.9
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 1.6e-93 346.7 243 71.2
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.7e-93 345.9 246 74.4
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 2.7e-93 345.9 245 71.0
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 2.7e-93 345.9 235 73.2
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 4.6e-93 345.1 243 71.2
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 6.7e-92 341.3 229 74.2
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 6.7e-92 341.3 213 78.9
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 1.9e-91 339.7 227 73.6
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 1.9e-91 339.7 212 79.2
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.5e-91 339.3 245 70.6
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.5e-91 339.3 252 69.8
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 4.3e-91 338.6 198 82.3
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 7.4e-91 337.8 227 73.6
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 9.6e-91 337.4 199 81.4
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 1.3e-90 337.0 211 77.3
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 1.6e-90 336.7 219 74.4
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.8e-90 335.9 235 72.8
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 3.7e-90 335.5 199 80.9
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.7e-90 335.5 225 75.1
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 4.8e-90 335.1 197 79.7
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 4.8e-90 335.1 202 81.7
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 1.4e-89 333.6 223 75.3
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 3.1e-89 332.4 221 74.7
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 3.1e-89 332.4 229 72.5
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 4.0e-89 332.0 253 67.6
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.0e-89 332.0 197 80.7
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 5.3e-89 331.6 226 73.0
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 6.9e-89 331.3 247 68.4
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 6.9e-89 331.3 224 72.8
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 6.9e-89 331.3 225 76.0
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 1.2e-88 330.5 199 81.9
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 1.2e-88 330.5 221 72.9
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 1.2e-88 330.5 225 75.1
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 2.0e-88 329.7 233 70.8
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 2.0e-88 329.7 201 78.6
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 2.0e-88 329.7 229 73.8
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 2.0e-88 329.7 223 72.6
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 4.5e-88 328.6 225 74.7
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 4.5e-88 328.6 215 76.3
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 4.5e-88 328.6 235 71.5
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 4.5e-88 328.6 197 79.7
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 3.8e-87 325.5 196 80.1
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 4.9e-87 325.1 198 79.8
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 8.4e-87 324.3 212 75.0
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 8.4e-87 324.3 198 80.3
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 8.4e-87 324.3 208 74.0
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 3.2e-86 322.4 200 78.5
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 4.2e-86 322.0 195 81.5
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.6e-85 320.1 224 70.1
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 3.5e-85 318.9 200 76.5
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 3.5e-85 318.9 223 69.5
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 7.9e-85 317.8 195 79.5
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.3e-84 317.0 210 73.3
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 1.3e-84 317.0 213 72.3
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 5.1e-84 315.1 198 76.3
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.5e-83 313.5 215 74.0
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.5e-83 313.5 217 70.5
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 1.6e-82 310.1 197 78.7
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 2.1e-82 309.7 198 75.8
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 2.8e-82 309.3 210 72.4
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 4.8e-82 308.5 228 65.4
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 6.2e-82 308.1 198 74.7
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 6.2e-82 308.1 198 74.7
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 6.2e-82 308.1 224 69.2
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.4e-81 307.0 253 62.8
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 1.8e-81 306.6 212 71.2
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 2.4e-81 306.2 207 70.5
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 3.1e-81 305.8 198 74.2
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 5.3e-81 305.1 207 70.0
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 6.9e-81 304.7 198 73.7
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 6.9e-81 304.7 200 72.0
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 1.2e-80 303.9 198 73.7
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 2.0e-80 303.1 198 70.7
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 3.4e-80 302.4 208 71.6
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 4.5e-80 302.0 198 73.7
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 2.9e-79 299.3 195 72.8
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.9e-78 296.6 196 79.1
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 4.2e-78 295.4 199 74.4
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 2.5e-75 286.2 194 70.6
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 1.4e-73 280.4 225 63.1
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 4.1e-73 278.9 191 70.2
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.7e-63 246.9 147 81.0
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 3.8e-63 245.7 199 58.8
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 2.7e-61 239.6 153 79.1
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 2.6e-59 233.0 129 88.4
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 2.7e-53 213.0 246 50.4
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 5.2e-52 208.8 147 72.8
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.7e-50 203.8 246 49.6
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 3.8e-47 192.6 187 50.3
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 8.5e-47 191.4 159 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 2.0e-43 180.3 154 56.5
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 1.3e-42 177.6 201 46.8
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 6.3e-42 175.3 252 44.0
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 6.3e-42 175.3 131 65.6
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 2.9e-39 166.4 121 72.7
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.4e-36 157.5 121 71.9
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 3.4e-35 152.9 97 71.1
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 2.4e-33 146.7 191 42.9
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 2.4e-33 146.7 121 62.0
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 4.1e-33 146.0 112 63.4
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 3.8e-31 139.4 94 75.5
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 5.0e-31 139.0 98 67.3
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.1e-30 137.9 186 40.9
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.1e-30 137.9 144 46.5
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 1.0e-28 131.3 131 58.0
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.6e-21 107.5 71 67.6
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 2.6e-19 100.1 81 65.4
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 5.0e-15 85.9 51 78.4
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 5.0e-15 85.9 53 69.8
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.5e-11 74.3 64 56.2
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 4.9e-10 69.3 52 67.3
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 4.9e-10 69.3 51 58.8
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 8.3e-10 68.6 55 50.9
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.4e-09 67.8 51 56.9
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 2.4e-09 67.0 43 76.7
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 1.2e-08 64.7 77 50.6


User provided reference genes

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