Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.2e-227 792.0 397 100.0
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.7e-131 473.4 397 61.5
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.9e-130 469.9 411 58.6
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.5e-130 469.5 409 58.7
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.2e-130 469.2 407 59.2
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.2e-130 468.8 398 60.1
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.2e-129 467.2 399 60.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 2.1e-129 466.5 392 60.2
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.7e-129 466.1 402 60.4
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 1.4e-128 463.8 396 59.3
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.3e-128 463.0 396 59.3
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.6e-127 459.5 397 58.7
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 4.4e-127 458.8 437 57.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 6.3e-126 454.9 479 53.9
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 8.2e-126 454.5 401 58.1
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.4e-125 453.0 396 58.1
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 4.1e-125 452.2 398 57.8
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 5.3e-125 451.8 397 57.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.0e-124 449.9 404 57.4
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.6e-124 449.5 403 58.6
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 3.5e-124 449.1 451 55.0
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 5.9e-124 448.4 404 59.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.2e-123 446.4 401 56.6
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.2e-123 446.4 401 57.4
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 5.0e-123 445.3 402 58.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 2.5e-122 443.0 414 54.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 4.2e-122 442.2 401 56.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 6.1e-121 438.3 436 53.2
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 6.1e-121 438.3 409 54.0
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.4e-120 437.2 405 58.0
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 3.0e-120 436.0 399 56.4
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 6.8e-120 434.9 410 57.3
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.2e-119 434.1 404 57.7
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.2e-119 434.1 348 63.2
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.5e-119 433.7 408 56.1
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.7e-118 430.3 435 54.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.8e-117 426.8 401 58.1
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.4e-117 426.4 400 56.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 4.1e-117 425.6 407 55.3
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 3.5e-116 422.5 405 54.1
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.9e-115 419.5 407 55.5
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 7.2e-114 414.8 411 53.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 9.4e-114 414.5 412 53.6
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.2e-113 414.1 407 54.8
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.6e-113 412.5 401 54.1
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 4.7e-113 412.1 412 55.8
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 6.1e-113 411.8 396 56.3
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.8e-112 410.2 416 52.4
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.3e-112 409.8 412 53.2
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.0e-112 409.5 365 58.6
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.5e-111 407.1 417 52.3
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 9.8e-111 404.4 420 51.4
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.3e-110 404.1 399 54.9
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 8.3e-110 401.4 414 53.6
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 8.3e-110 401.4 428 50.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.8e-109 400.2 357 58.5
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 4.5e-108 395.6 413 51.8
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 8.6e-107 391.3 398 52.3
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.4e-104 384.0 532 44.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.9e-102 375.6 417 51.6
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 7.0e-101 371.7 385 52.2
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 9.2e-101 371.3 399 50.9
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.2e-100 370.9 421 50.6
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.7e-99 367.1 419 48.4
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 5.6e-98 362.1 392 50.8
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.5e-95 354.0 297 61.3
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 2.2e-94 350.1 399 50.4
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.0e-93 345.1 295 58.0
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.2e-92 344.4 302 59.6
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.0e-92 343.6 398 49.2
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.9e-91 339.3 319 55.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 8.6e-91 338.2 433 47.8
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.1e-90 337.8 462 46.1
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 7.3e-90 335.1 291 59.5
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.3e-88 330.1 299 56.2
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.4e-87 325.9 315 54.0
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 7.5e-87 325.1 304 56.2
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.7e-86 322.8 299 57.2
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.3e-86 321.6 301 56.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 1.9e-85 320.5 327 52.9
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 7.1e-85 318.5 313 55.9
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 4.6e-84 315.8 430 43.5
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.5e-82 308.1 301 54.8
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 5.2e-80 302.4 331 51.7
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 3.4e-79 299.7 276 59.1
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.4e-79 299.7 317 52.4
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 7.6e-79 298.5 421 43.2
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.9e-78 296.6 288 53.5
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 3.7e-78 296.2 322 49.7
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.6e-75 285.0 341 48.7
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.5e-74 283.5 435 43.0
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.3e-74 283.1 402 43.8
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 3.3e-74 283.1 308 51.6
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.2e-73 281.2 309 50.2
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.3e-70 271.2 575 33.7
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.7e-70 270.8 464 38.4
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.9e-69 267.3 296 50.7
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.2e-69 266.5 407 40.3
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.4e-61 241.1 318 45.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 3.3e-58 229.9 300 44.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.6e-57 226.5 153 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.8e-56 224.2 317 45.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.2e-53 213.4 262 45.8
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 3.2e-53 213.4 286 43.7
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.6e-52 209.5 269 42.4
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.9e-51 206.5 280 44.6
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.0e-47 194.1 399 32.3
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.2e-46 190.7 182 56.6
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.5e-42 177.9 239 43.5
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 5.5e-37 159.5 94 77.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 8.7e-35 152.1 364 31.9
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.5e-34 151.4 98 72.4
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 7.2e-29 132.5 289 31.5
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.7e-26 122.1 82 68.3
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.8e-24 117.9 85 67.1
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 8.5e-22 109.0 128 47.7
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.1e-21 108.6 91 61.5
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 5.5e-21 106.3 67 76.1
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.3e-18 97.1 65 70.8
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.3e-17 95.1 161 34.8
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 8.5e-14 82.4 204 33.3
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.6e-12 77.0 61 55.7
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.8e-11 72.4 89 49.4
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-10 72.0 67 52.2
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.3e-09 68.6 45 64.4
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 2.6e-07 60.8 59 52.5
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.9e-07 59.7 71 40.8


User provided reference genes

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