Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.8e-96 353.6 176 100.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.6e-79 298.9 166 90.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 8.2e-78 293.9 174 82.2
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.4e-77 292.4 174 81.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 7.0e-77 290.8 174 82.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.9e-76 287.7 174 79.3
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 5.9e-76 287.7 174 79.3
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.0e-75 287.0 174 79.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.3e-75 286.6 175 80.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.7e-75 286.2 175 79.4
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.8e-75 285.0 178 78.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 6.5e-75 284.3 164 83.5
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 6.5e-75 284.3 178 77.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.5e-75 284.3 174 79.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.5e-75 284.3 174 79.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.5e-74 283.1 174 79.3
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-74 282.7 174 79.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 4.2e-74 281.6 175 78.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 4.2e-74 281.6 175 78.3
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-74 281.6 174 79.3
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 5.5e-74 281.2 175 77.1
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 7.2e-74 280.8 178 75.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 7.2e-74 280.8 178 78.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.2e-73 280.0 175 77.7
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.2e-73 280.0 175 77.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.7e-73 278.9 180 75.0
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.6e-73 278.5 174 75.9
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.7e-73 278.1 174 77.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 4.7e-73 278.1 166 78.9
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.1e-73 277.7 174 76.4
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 6.1e-73 277.7 178 76.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 6.1e-73 277.7 178 76.4
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.0e-72 276.9 178 76.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.4e-72 276.6 175 77.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.4e-72 276.6 176 76.1
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.8e-72 276.2 178 74.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.8e-72 276.2 159 83.0
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-72 275.4 159 83.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 4.0e-72 275.0 175 77.1
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.2e-72 274.6 157 83.4
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.2e-72 274.6 176 75.6
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 5.2e-72 274.6 159 82.4
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.8e-72 274.2 177 75.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.8e-72 274.2 167 80.2
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.8e-72 273.9 159 83.0
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.2e-71 273.5 159 81.8
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.5e-71 273.1 164 80.5
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.5e-71 273.1 178 75.3
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.0e-71 272.7 177 76.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.0e-71 272.7 173 75.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.0e-71 272.7 175 77.7
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 4.4e-71 271.6 197 69.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 7.5e-71 270.8 159 80.5
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.3e-70 270.0 156 82.7
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.7e-70 269.6 174 74.7
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 2.2e-70 269.2 177 75.1
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 3.7e-70 268.5 159 81.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.7e-70 268.5 159 81.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.8e-70 268.1 167 76.6
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 4.8e-70 268.1 182 73.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 4.8e-70 268.1 161 78.9
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 6.3e-70 267.7 167 77.8
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 8.3e-70 267.3 154 83.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.1e-69 266.9 173 72.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-69 266.9 175 73.7
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.8e-69 266.2 159 80.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.4e-69 265.8 183 73.2
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.4e-69 265.8 173 75.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 4.1e-69 265.0 175 73.1
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.1e-69 265.0 177 72.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 5.4e-69 264.6 161 79.5
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 7.0e-69 264.2 176 73.9
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 7.0e-69 264.2 178 73.6
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.6e-68 263.1 159 78.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.6e-68 263.1 174 73.0
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.7e-68 262.3 167 77.2
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.7e-68 262.3 159 79.2
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 3.5e-68 261.9 175 74.9
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 3.5e-68 261.9 159 79.2
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 5.9e-68 261.2 172 75.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.0e-67 260.4 174 73.6
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.0e-67 260.4 174 73.6
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.7e-67 259.6 176 71.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.7e-67 259.6 178 70.8
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-67 259.2 162 75.3
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.3e-67 259.2 159 78.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.8e-67 258.5 171 73.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.5e-67 257.7 156 80.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.1e-66 256.9 173 71.1
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-66 255.8 175 69.7
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.5e-66 255.8 145 84.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.2e-66 255.4 177 71.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.2e-66 255.4 175 70.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 7.2e-66 254.2 159 75.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.2e-66 254.2 173 70.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.1e-65 252.7 145 84.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.6e-65 251.9 166 74.7
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 4.7e-65 251.5 168 73.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 4.7e-65 251.5 168 73.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.7e-65 251.5 145 83.4
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.8e-64 249.6 166 71.7
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.8e-64 249.6 171 73.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 6.8e-64 247.7 171 71.9
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.2e-63 246.9 146 81.5
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.5e-63 246.5 144 81.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.5e-63 244.2 142 82.4
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 3.7e-62 241.9 170 68.8
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.1e-61 238.8 148 79.1
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.1e-61 238.4 156 73.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 7.0e-61 237.7 137 83.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-60 236.9 162 70.4
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.6e-60 236.5 140 79.3
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.3e-59 233.4 167 70.1
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-58 230.3 137 82.5
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.8e-57 225.7 154 69.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.0e-57 224.2 174 66.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 4.1e-53 211.8 135 77.8
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.7e-52 209.1 159 64.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.0e-51 207.2 164 59.8
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.2e-48 194.9 155 64.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.9e-48 194.1 175 51.4
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-45 187.2 117 76.9
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.9e-45 186.4 109 82.6
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.5e-44 182.2 141 65.2
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 6.0e-44 181.4 117 76.9
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-43 180.3 110 76.4
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-42 176.8 126 69.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.3e-42 175.6 113 75.2
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.5e-39 166.8 152 52.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.9e-37 159.8 100 76.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.1e-36 156.4 111 68.5
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 3.6e-33 145.6 121 59.5
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.8e-31 138.3 77 81.8
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.4e-29 132.9 119 58.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.1e-29 132.1 119 57.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-27 127.1 93 67.7
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.7e-27 126.7 184 44.0
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-26 122.9 77 71.4
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.6e-26 121.7 68 80.9
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.6e-26 120.9 77 74.0
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.6e-25 120.2 80 73.8
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.1e-25 117.9 131 50.4
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.2e-24 115.2 120 55.8
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.4e-23 112.5 64 82.8
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-17 93.6 77 61.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.6e-17 92.4 63 68.3
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 6.2e-17 91.7 52 80.8
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 9.9e-15 84.3 58 69.0
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.9e-14 82.8 59 61.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.9e-06 55.5 33 75.8


User provided reference genes

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