Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.7e-134 482.6 246 100.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 3.5e-90 335.5 244 69.7
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.2e-89 332.8 246 69.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.1e-88 330.5 247 69.2
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 5.5e-88 328.2 246 67.1
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 5.5e-88 328.2 256 68.4
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-87 327.0 247 69.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 8.0e-87 324.3 247 66.0
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 6.7e-86 321.2 257 65.8
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.3e-85 318.9 246 65.4
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 5.7e-85 318.2 246 66.7
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 7.5e-85 317.8 252 63.9
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.7e-85 317.4 251 63.3
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.3e-84 317.0 247 66.8
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-84 316.2 243 67.1
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.2e-84 316.2 243 67.1
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 4.8e-84 315.1 246 63.0
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 6.3e-84 314.7 245 66.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 8.2e-84 314.3 244 64.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.4e-83 313.5 245 65.3
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.4e-83 313.5 251 65.7
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-83 313.2 244 64.3
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.8e-83 313.2 250 63.6
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.4e-83 312.8 284 59.2
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.1e-83 312.4 246 63.8
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 3.1e-83 312.4 245 63.7
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.1e-83 312.0 245 64.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.6e-82 310.1 254 66.1
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.0e-82 309.7 245 64.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.7e-82 309.3 246 65.4
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.5e-82 308.9 241 67.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.5e-82 308.9 247 64.4
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.5e-82 308.9 252 63.1
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 4.5e-82 308.5 254 64.6
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.9e-82 308.1 245 65.7
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.0e-81 307.4 270 61.1
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-81 307.4 245 64.9
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.0e-81 307.4 252 63.5
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.3e-81 307.0 251 63.7
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.2e-81 306.2 248 65.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.9e-81 305.8 212 69.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.9e-81 305.8 243 64.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.9e-81 305.8 244 64.8
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 3.8e-81 305.4 248 62.9
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 5.0e-81 305.1 251 63.7
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.1e-80 303.9 244 62.7
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.1e-80 303.9 218 71.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.5e-80 303.5 220 69.1
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.9e-80 303.1 243 65.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.5e-80 302.8 244 64.3
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.2e-80 302.4 249 62.7
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.2e-80 302.0 270 60.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 5.5e-80 301.6 247 63.2
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.6e-79 298.9 254 62.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.1e-79 298.1 267 58.4
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 8.0e-79 297.7 244 63.9
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 8.0e-79 297.7 247 62.3
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.0e-78 297.4 244 65.2
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.0e-78 297.4 251 62.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.4e-78 297.0 242 64.9
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.8e-78 296.6 245 64.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.8e-78 296.6 245 61.6
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.0e-78 295.8 213 69.0
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 3.0e-78 295.8 252 61.9
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 4.0e-78 295.4 251 63.3
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.0e-78 295.4 244 63.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 8.8e-78 294.3 247 61.5
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.2e-77 293.9 249 62.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.5e-77 293.5 244 63.5
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.5e-77 293.5 247 61.5
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 2.0e-77 293.1 243 62.1
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.4e-77 292.4 247 61.9
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.4e-77 292.0 247 61.9
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 4.4e-77 292.0 249 61.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 9.8e-77 290.8 244 61.1
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-76 290.4 243 61.7
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.3e-76 290.4 241 62.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.2e-76 289.7 243 61.3
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.2e-76 289.7 244 62.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.8e-76 289.3 244 63.5
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 4.8e-76 288.5 241 62.2
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 4.8e-76 288.5 245 64.1
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.3e-76 288.1 269 58.4
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 8.3e-76 287.7 244 64.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 8.3e-76 287.7 248 58.9
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-75 287.0 245 61.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.8e-75 286.6 258 59.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.1e-75 285.8 244 59.8
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.1e-75 285.8 247 59.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 9.1e-75 284.3 246 59.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.1e-75 284.3 265 58.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.5e-74 282.3 242 58.3
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.7e-73 280.0 251 57.8
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.2e-72 275.8 168 76.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 7.2e-72 274.6 246 57.7
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 8.0e-71 271.2 247 56.7
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 8.0e-71 271.2 169 77.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.2e-69 267.3 347 46.7
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 6.3e-68 261.5 213 61.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.4e-67 259.6 252 55.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 9.2e-67 257.7 212 64.6
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.5e-66 255.8 181 69.6
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.0e-65 251.9 193 65.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.9e-64 250.0 212 63.2
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-64 249.6 182 67.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 8.9e-62 241.1 226 54.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 8.9e-62 241.1 245 54.7
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.7e-60 236.9 171 69.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.7e-60 235.7 163 69.3
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 2.4e-59 233.0 246 52.4
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.2e-59 231.1 247 53.4
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.7e-58 229.6 142 75.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 7.3e-56 221.5 162 68.5
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.8e-54 216.9 175 61.7
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.2e-53 214.2 245 49.0
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.7e-52 209.1 195 54.4
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 8.3e-52 208.0 197 56.3
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.9e-51 206.8 178 63.5
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.2e-51 206.1 185 57.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.0e-50 203.4 177 61.6
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.8e-50 201.4 185 58.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.7e-49 200.3 196 56.6
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 1.1e-43 181.0 180 50.0
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 2.1e-42 176.8 233 43.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 2.1e-39 166.8 108 74.1
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.2e-37 161.0 152 57.2
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.5e-37 160.6 97 80.4
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.9e-35 153.7 95 76.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 5.4e-35 152.1 165 50.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 9.2e-35 151.4 154 52.6
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.1e-34 150.2 188 47.3
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 9.6e-32 141.4 176 48.9
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.2e-31 138.7 149 50.3
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 8.1e-31 138.3 156 52.6
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.9e-30 134.8 186 41.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.7e-28 130.6 128 51.6
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.7e-25 120.6 124 50.8
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 8.7e-25 118.2 110 54.5
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.5e-24 116.7 125 48.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 9.6e-24 114.8 181 37.6
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 4.8e-23 112.5 130 49.2
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-23 112.5 130 49.2
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.8e-23 112.5 79 70.9
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 6.2e-23 112.1 68 73.5
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 6.0e-18 95.5 65 70.8
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 8.7e-17 91.7 66 65.2
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-16 91.3 68 70.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 4.8e-15 85.9 119 47.9
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.0e-13 80.5 95 49.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.5e-13 79.3 108 49.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.9e-12 75.9 95 48.4
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 6.4e-12 75.5 52 71.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.1e-06 56.6 36 75.0


User provided reference genes

Program Settings