Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 0.0e+00 1546.6 784 100.0
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 2.0e-200 703.4 368 97.8
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 5.1e-87 326.6 856 34.6
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 3.8e-82 310.5 815 31.9
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 5.5e-73 280.0 841 32.1
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 9.4e-73 279.3 841 31.7
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.4e-71 275.4 873 32.0
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 8.2e-69 266.2 841 30.1
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 9.1e-68 262.7 906 30.4
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.3e-66 258.8 898 29.3
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 3.2e-65 254.2 898 31.5
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 5.1e-63 246.9 822 29.3
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 6.7e-63 246.5 803 27.9
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 4.4e-62 243.8 901 29.6
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.4e-62 243.8 835 29.3
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 1.3e-61 242.3 937 27.7
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 9.1e-60 236.1 809 30.8
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.2e-59 235.7 817 28.0
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 5.9e-59 233.4 818 31.4
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 7.7e-59 233.0 890 28.1
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 1.3e-58 232.3 887 27.8
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 1.1e-57 229.2 833 28.6
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 2.5e-57 228.0 885 27.6
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 7.2e-57 226.5 795 30.1
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.6e-56 225.3 793 30.0
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.1e-56 224.9 874 29.4
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 3.0e-55 221.1 876 29.7
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 3.3e-54 217.6 837 29.0
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 7.5e-54 216.5 829 26.4
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.7e-53 214.2 850 28.4
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.7e-53 214.2 803 28.5
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 6.3e-53 213.4 872 26.5
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 4.1e-52 210.7 818 28.9
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 5.3e-52 210.3 811 28.6
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 1.0e-50 206.1 796 28.0
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 1.3e-50 205.7 867 28.4
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 6.5e-50 203.4 815 28.2
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 1.9e-49 201.8 713 28.9
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 2.5e-49 201.4 822 27.0
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 4.2e-49 200.7 740 28.0
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.5e-49 200.3 812 29.3
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 9.4e-49 199.5 800 28.5
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 1.2e-48 199.1 818 27.9
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 1.2e-48 199.1 277 45.5
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.7e-48 198.0 810 28.9
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 4.7e-48 197.2 778 27.8
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 8.0e-48 196.4 815 28.1
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 2.3e-47 194.9 802 28.6
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 3.0e-47 194.5 989 26.2
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 4.0e-47 194.1 808 28.5
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 6.8e-47 193.4 803 28.9
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 2.0e-46 191.8 805 28.8
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 7.5e-46 189.9 812 28.8
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 7.5e-46 189.9 836 27.4
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 6.3e-45 186.8 831 27.8
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 3.1e-44 184.5 781 27.9
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 5.9e-43 180.3 847 26.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.7e-42 178.7 806 27.5
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 1.1e-41 176.0 242 46.7
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 1.1e-41 176.0 794 28.1
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 3.2e-41 174.5 1008 24.8
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 4.2e-41 174.1 931 25.5
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 5.5e-41 173.7 790 27.7
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 7.2e-41 173.3 834 26.9
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.6e-40 172.2 827 27.7
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 2.7e-40 171.4 812 27.6
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 4.7e-40 170.6 833 27.4
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.4e-39 169.1 848 27.5
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 1.4e-39 169.1 899 25.6
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.0e-39 167.5 278 42.1
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 5.2e-39 167.2 786 26.6
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 8.8e-39 166.4 795 28.1
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 3.4e-38 164.5 938 25.3
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 5.7e-38 163.7 984 25.4
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 7.5e-38 163.3 224 45.5
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 1.7e-37 162.2 286 39.2
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 2.8e-37 161.4 915 27.5
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 2.8e-37 161.4 287 39.7
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 5.4e-36 157.1 271 40.6
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 2.0e-35 155.2 785 25.1
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 2.0e-35 155.2 268 38.4
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 7.7e-35 153.3 779 25.0
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.3e-34 151.8 734 26.2
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.9e-34 151.4 160 52.5
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 1.9e-33 148.7 253 41.1
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 3.3e-33 147.9 785 25.9
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 4.7e-32 144.1 785 26.4
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 4.0e-31 141.0 836 25.7
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.2e-30 139.4 674 26.4
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 3.4e-30 137.9 841 24.4
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 3.4e-30 137.9 841 24.4
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 3.4e-30 137.9 833 25.0
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 4.4e-30 137.5 264 37.9
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 4.4e-30 137.5 850 24.8
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 5.7e-30 137.1 759 25.7
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 1.3e-29 136.0 229 41.0
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 1.7e-29 135.6 840 25.1
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 1.7e-29 135.6 840 25.1
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 1.1e-28 132.9 840 25.0
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 7.0e-28 130.2 250 37.2
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 5.9e-27 127.1 258 37.2
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.3e-26 125.9 252 36.9
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.7e-26 125.6 312 34.3
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 3.9e-26 124.4 167 44.9
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 5.0e-26 124.0 781 23.2
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 3.3e-25 121.3 292 34.9
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 9.5e-25 119.8 260 36.2
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 1.6e-24 119.0 256 38.3
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 3.6e-24 117.9 275 32.7
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.8e-23 115.5 136 48.5
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 2.3e-23 115.2 253 34.0
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.3e-23 115.2 136 48.5
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 9.8e-22 109.8 459 25.9
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.7e-21 109.0 262 32.8
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.4e-20 105.9 289 33.6
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.3e-18 99.4 674 26.0
Sc18g0006330 Simmondsia chinensis HOM05D000099 ORTHO05D002060 1.9e-17 95.5 66 78.8
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.1e-09 69.7 144 34.7
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 1.4e-07 62.8 275 26.2
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 8.9e-07 60.1 83 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.5e-06 59.3 130 28.5
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 2.6e-06 58.5 201 30.8
Pp3c7_23790 Physcomitrium patens HOM05D036654 ORTHO05D050357 7.6e-06 57.0 138 30.4


User provided reference genes

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