Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 6.0e-129 464.2 229 100.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.4e-122 443.0 227 93.4
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.4e-122 443.0 227 93.8
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.2e-122 441.8 227 93.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.2e-122 441.8 227 93.0
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 92.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 92.6
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 93.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 93.4
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 93.0
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 93.0
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 92.5
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 92.6
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 92.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 93.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 92.5
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 92.1
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 91.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 92.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 92.5
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 2.7e-121 438.7 227 93.0
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.6
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 92.6
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.6e-121 438.0 227 91.6
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.6e-121 438.0 227 91.6
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 91.7
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 92.1
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 91.7
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 91.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 91.3
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 91.7
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 92.1
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 92.5
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 90.3
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 92.1
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 92.5
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 90.7
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 92.1
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 91.2
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 92.1
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 3.9e-120 434.9 227 92.1
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 91.6
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 91.6
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 6.6e-120 434.1 229 91.3
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 91.6
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 93.0
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 91.2
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.5
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 91.2
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.6e-118 429.5 229 90.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 91.2
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.0
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 89.9
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.4e-117 425.6 227 89.9
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 5.3e-117 424.5 229 88.6
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 89.4
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 88.5
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.6e-116 422.2 219 90.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.4e-116 421.8 227 89.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 88.1
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 88.1
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 87.2
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 88.1
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 88.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 87.7
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 9.3e-114 413.7 229 87.8
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 88.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 88.1
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.1e-113 412.5 229 87.3
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.5e-113 411.8 229 85.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 86.8
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 6.0e-113 411.0 229 86.0
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 83.4
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 86.3
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 83.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.3e-112 409.1 226 85.8
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.9e-112 408.3 229 85.6
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.7e-112 407.5 226 85.0
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 88.5
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.9e-111 406.0 229 85.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.9e-111 406.0 229 85.2
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.9
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-111 404.8 229 84.7
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 5.6e-111 404.4 229 84.7
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 5.6e-111 404.4 238 83.2
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 7.4e-111 404.1 229 84.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.1e-110 402.5 229 84.3
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.8e-110 402.1 229 84.7
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 6.9e-109 397.5 256 77.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 2.0e-108 396.0 227 82.4
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.3e-107 393.3 227 81.9
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.3e-107 393.3 204 93.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.9e-107 392.1 202 93.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 4.2e-106 388.3 203 91.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.5e-103 379.0 227 82.4
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.7e-102 375.2 227 76.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 9.0e-101 370.5 209 86.1
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 3.4e-100 368.6 227 76.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.2e-99 365.9 226 74.3
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.2e-99 365.9 226 74.3
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.2e-99 365.9 200 89.5
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 4.9e-99 364.8 231 79.2
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 4.9e-99 364.8 210 81.4
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.9e-98 362.8 190 93.7
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 4.2e-98 361.7 190 93.2
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 7.1e-98 360.9 191 92.1
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.1e-97 359.4 227 72.2
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.8e-96 356.3 219 80.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.5e-95 352.4 247 72.9
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 5.7e-95 351.3 229 74.7
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 8.2e-94 347.4 191 88.5
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.8e-93 346.3 227 77.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.1e-93 345.5 185 92.4
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 4.1e-93 345.1 187 90.9
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 4.5e-92 341.7 185 89.2
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 8.5e-91 337.4 226 69.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 2.5e-87 325.9 226 70.4
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 8.5e-83 310.8 160 92.5
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 8.5e-83 310.8 183 85.2
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 9.4e-82 307.4 357 49.6
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.0e-75 287.3 162 85.2
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.4e-69 266.2 162 76.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.0e-59 231.9 120 90.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 8.0e-57 224.6 154 68.2
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.8e-56 223.4 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.6e-36 155.6 140 58.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.1e-27 125.6 69 85.5
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-23 112.8 62 79.0
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 4.6e-20 102.4 124 52.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 8.6e-19 98.2 152 41.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.5e-15 87.4 45 86.7
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-15 85.9 81 54.3
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 62 59.7
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.6e-12 77.4 87 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.0e-11 74.7 49 71.4
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.8e-08 63.9 82 47.6


User provided reference genes

Program Settings