Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.0e-58 229.9 126 100.0
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.6e-35 152.9 131 70.2
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.2e-33 146.7 126 66.7
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.9e-32 142.1 125 68.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.1e-31 140.2 129 65.9
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.4e-31 139.8 126 65.1
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.2e-31 138.7 129 65.1
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 3.2e-31 138.7 127 63.0
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.2e-31 138.7 126 65.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.2e-31 138.7 129 65.1
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 4.1e-31 138.3 125 64.0
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 5.4e-31 137.9 126 65.9
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.1e-31 137.5 105 71.4
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 7.1e-31 137.5 128 63.3
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.6e-30 136.3 125 62.4
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.1e-30 136.0 128 65.6
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.1e-30 136.0 126 63.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.5e-30 135.2 122 62.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 3.5e-30 135.2 117 65.0
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 65.9
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.6e-30 134.8 126 64.3
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 62.1
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 7.8e-30 134.0 126 63.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.0e-29 133.7 127 62.2
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.3e-29 133.3 127 60.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 66.1
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.7e-29 132.9 127 65.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.3e-29 132.5 127 62.2
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 61.9
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.0e-29 132.1 101 70.3
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 64.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.9e-29 131.7 125 63.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.9e-29 131.7 118 64.4
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 8.6e-29 130.6 125 61.6
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 61.9
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 61.9
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 125 61.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 2.5e-28 129.0 127 63.8
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 64.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 94 72.3
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-28 128.3 127 61.4
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 4.3e-28 128.3 123 60.2
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 119 62.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 57.6
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 7.3e-28 127.5 111 66.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.3e-28 127.5 126 64.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 9.6e-28 127.1 124 63.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 9.6e-28 127.1 130 63.8
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 119 61.3
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 60.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.6e-27 126.3 128 62.5
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.6e-27 126.3 125 62.4
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.6e-27 126.3 128 64.1
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.6e-27 126.3 127 58.3
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 2.1e-27 125.9 121 62.0
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 64.0
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 61.1
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 3.6e-27 125.2 127 58.3
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 3.6e-27 125.2 127 58.3
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 3.6e-27 125.2 130 60.0
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 62.7
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 62.7
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 4.7e-27 124.8 101 70.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 8.1e-27 124.0 106 65.1
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 8.1e-27 124.0 124 59.7
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.1e-26 123.6 120 61.7
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 60.6
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 106 63.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.4e-26 123.2 128 64.1
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-26 123.2 126 61.1
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.4e-26 123.2 128 60.9
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 120 63.3
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.8e-26 122.9 129 59.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.8e-26 122.9 129 59.7
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.8e-26 122.9 125 58.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.8e-26 122.9 128 61.7
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.4e-26 122.5 129 59.7
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.4e-26 122.5 129 57.4
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-26 122.5 124 61.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.1e-26 122.1 128 60.2
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-26 122.1 126 58.7
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-26 122.1 127 59.1
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 3.1e-26 122.1 128 60.9
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-26 122.1 127 59.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 4.0e-26 121.7 117 61.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.0e-26 121.7 120 63.3
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 57.1
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.8e-26 120.9 128 59.4
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 130 57.7
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.2e-25 120.2 130 57.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.5e-25 119.8 122 59.0
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.0e-25 119.4 130 58.5
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.0e-25 119.4 130 58.5
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.0e-25 119.4 130 58.5
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 130 57.7
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.0e-25 119.4 128 58.6
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 57.6
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 57.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.6e-25 119.0 126 60.3
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.6e-25 119.0 124 61.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.4e-25 118.6 124 58.9
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-25 118.6 124 58.9
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 57.4
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.4e-25 118.2 125 58.4
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 57.9
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 57.1
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 4.4e-25 118.2 113 58.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-25 117.9 125 56.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-25 117.9 124 58.9
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 7.6e-25 117.5 126 59.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 9.9e-25 117.1 121 59.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 57.6
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 56.8
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 56.8
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.7e-24 116.3 101 64.4
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.7e-24 116.3 121 59.5
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-24 115.9 125 56.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.2e-24 115.9 122 57.4
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.2e-24 115.9 125 57.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.9e-24 115.5 130 56.9
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-24 115.5 125 56.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.9e-24 115.5 128 59.4
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-24 115.2 125 56.8
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 126 57.1
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 6.4e-24 114.4 126 57.1
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.4e-24 114.0 128 56.2
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.1e-23 113.6 123 55.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.1e-23 113.6 122 57.4
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 56.0
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 56.0
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.4e-23 112.5 122 57.4
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 114 56.1
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.2e-22 110.2 125 56.8
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-22 110.2 133 54.1
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.1e-22 109.4 127 55.1
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.1e-22 109.4 124 54.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.7e-22 109.0 124 54.8
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.5e-22 108.6 123 54.5
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.0e-21 107.1 129 55.0
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-21 106.3 96 63.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.1e-21 104.8 118 58.5
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.5e-20 103.2 102 59.8
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.3e-19 100.1 112 56.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 6.2e-19 97.8 121 53.7
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 5.3e-18 94.7 122 49.2
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 6.9e-18 94.4 125 52.0
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 9.9e-17 90.5 131 49.6
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 8.4e-16 87.4 125 44.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.4e-15 86.7 130 51.5
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.9e-15 86.3 79 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.4e-15 85.9 92 55.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.2e-15 85.5 126 42.9
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.3e-15 84.0 107 54.2
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 9.3e-15 84.0 122 46.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 6.0e-14 81.3 47 91.5
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 5.6e-12 74.7 125 40.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 7.4e-12 74.3 53 73.6
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.1e-11 72.8 129 43.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 8.1e-11 70.9 77 54.5
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 3.1e-10 68.9 110 47.3
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.7e-06 55.8 68 50.0


User provided reference genes

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