Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 9.3e-256 886.3 436 100.0
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 3.2e-107 392.9 452 47.6
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 4.2e-107 392.5 435 49.4
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 3.7e-103 379.4 437 47.6
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 2.0e-101 373.6 442 45.0
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 8.5e-100 368.2 436 47.2
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.1e-99 367.9 448 45.3
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 7.2e-99 365.2 437 44.6
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 1.6e-98 364.0 434 44.9
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.1e-98 363.6 453 42.8
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 3.6e-98 362.8 453 44.8
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 3.6e-98 362.8 436 45.9
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 2.3e-97 360.1 448 46.2
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.0e-96 357.1 449 43.7
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 2.0e-96 357.1 442 45.5
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 7.5e-96 355.1 447 44.7
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 2.8e-95 353.2 442 43.7
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 4.8e-95 352.4 444 43.7
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.1e-94 351.3 439 45.8
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.1e-94 351.3 440 44.1
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 7.0e-94 348.6 443 44.0
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.0e-93 347.1 457 42.0
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.0e-93 347.1 415 45.3
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 7.7e-93 345.1 447 43.6
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.3e-92 344.4 439 44.2
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.7e-92 344.0 447 44.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 3.8e-92 342.8 438 45.7
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 8.5e-92 341.7 431 45.0
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.9e-91 340.5 435 45.3
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.2e-91 339.3 446 43.3
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.2e-90 337.8 449 42.5
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 2.3e-89 333.6 442 42.1
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 2.6e-88 330.1 432 43.1
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.7e-87 327.4 429 43.1
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 4.9e-87 325.9 441 42.0
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.1e-86 324.7 440 43.0
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.1e-86 324.7 445 42.0
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.4e-86 323.6 440 41.1
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 5.4e-86 322.4 439 42.6
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.1e-86 321.6 445 41.8
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 1.6e-85 320.9 438 42.2
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 3.5e-85 319.7 439 41.7
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 3.5e-85 319.7 442 42.1
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 3.5e-85 319.7 423 42.8
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 4.5e-85 319.3 445 41.6
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 3.8e-84 316.2 440 41.8
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 3.8e-84 316.2 438 41.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 5.0e-84 315.8 432 41.0
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 8.6e-84 315.1 440 41.8
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 8.6e-84 315.1 409 42.5
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-83 313.2 420 42.1
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 9.5e-83 311.6 443 39.3
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 4.7e-82 309.3 450 41.8
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 1.4e-81 307.8 439 40.8
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 2.3e-81 307.0 441 39.7
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 4.0e-81 306.2 442 39.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 5.2e-81 305.8 433 39.7
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 5.2e-81 305.8 442 40.0
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 6.8e-81 305.4 440 39.8
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 6.8e-81 305.4 435 40.0
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 6.8e-81 305.4 435 40.0
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 6.8e-81 305.4 450 40.7
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 6.8e-81 305.4 439 42.1
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 8.9e-81 305.1 437 40.5
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 2.0e-80 303.9 444 40.1
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 2.6e-80 303.5 435 41.1
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 3.7e-79 299.7 439 39.6
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.1e-78 298.1 444 39.4
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 2.7e-77 293.5 436 39.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.7e-76 290.8 439 38.3
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 5.0e-76 289.3 435 40.0
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 6.6e-76 288.9 431 39.2
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.6e-76 288.5 409 38.6
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 8.6e-76 288.5 437 38.4
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.1e-75 288.1 333 47.4
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.1e-73 280.0 409 38.4
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.2e-71 273.9 377 42.4
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 2.9e-71 273.5 439 36.4
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 4.6e-69 266.2 441 37.4
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.1e-67 261.5 381 41.7
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 4.7e-66 256.1 372 40.6
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 4.7e-66 256.1 264 47.7
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 4.0e-65 253.1 519 34.9
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.9e-65 251.9 280 48.2
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-64 251.1 279 47.0
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.1e-62 243.0 408 37.5
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.1e-59 235.0 269 44.2
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.8e-57 225.7 263 45.6
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.2e-53 214.9 271 42.8
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.5e-51 208.0 386 36.0
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 5.6e-51 206.1 450 33.3
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 8.9e-49 198.7 439 32.6
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 8.9e-49 198.7 442 31.7
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.9e-44 183.3 233 42.5
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.3e-43 180.3 196 43.9
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.6e-42 176.8 421 33.5
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 5.4e-38 162.9 361 32.4
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.4e-30 138.3 605 23.6
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.2e-23 114.4 444 26.1
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 4.2e-22 110.2 430 25.1
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 1.3e-20 105.1 329 26.7
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.3e-15 88.6 56 69.6
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.2e-14 84.0 66 60.6
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.8e-12 78.2 51 66.7
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.5e-08 63.5 48 60.4


User provided reference genes

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