Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 6.5e-109 397.9 231 100.0
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 6.5e-109 397.9 231 100.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.7e-38 163.3 251 43.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.5e-38 162.9 242 46.3
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.8e-37 160.6 242 45.9
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.8e-37 160.6 263 41.8
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.7e-37 158.7 243 45.7
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.5e-36 157.5 248 43.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.9e-36 157.1 267 41.6
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.3e-36 156.4 261 43.3
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 4.3e-36 156.0 254 43.3
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.6e-36 155.6 262 42.4
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-35 153.3 270 41.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.8e-35 153.3 239 45.6
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 8.1e-35 151.8 270 40.7
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.4e-34 150.2 271 40.2
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 3.1e-34 149.8 250 42.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.0e-34 149.4 253 41.9
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 5.3e-34 149.1 267 40.4
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 6.9e-34 148.7 264 47.3
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.9e-34 148.7 271 41.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-33 147.9 250 42.8
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-33 147.9 250 42.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.5e-33 146.0 252 40.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.6e-33 145.2 257 42.4
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 9.9e-33 144.8 244 43.0
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.3e-32 144.4 257 40.5
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.7e-32 144.1 254 40.2
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.2e-32 143.7 254 40.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 2.2e-32 143.7 276 40.6
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.8e-32 142.9 248 42.3
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.9e-32 142.5 258 39.1
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 6.4e-32 142.1 223 43.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 8.4e-32 141.7 243 41.6
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.4e-32 141.7 249 40.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.4e-31 141.0 240 47.9
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.4e-31 141.0 244 42.6
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.9e-31 140.6 247 40.1
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 2.4e-31 140.2 255 40.8
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.2e-30 137.9 255 40.8
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.2e-30 137.9 255 40.8
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.6e-30 137.5 253 40.3
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 2.1e-30 137.1 272 40.4
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.9e-30 135.2 272 39.7
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 7.9e-30 135.2 220 41.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 1.0e-29 134.8 257 38.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.0e-29 134.8 244 41.8
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.3e-29 134.4 223 41.3
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.3e-29 133.7 268 40.7
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 2.3e-29 133.7 245 43.7
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.3e-29 133.7 242 40.5
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.3e-29 133.7 246 39.4
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 3.0e-29 133.3 250 39.2
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 6.7e-29 132.1 236 42.8
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.1e-28 131.3 261 40.2
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.1e-28 131.3 244 42.2
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.5e-28 131.0 257 37.4
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.9e-28 130.6 244 41.4
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.5e-28 130.2 223 42.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.3e-28 129.8 261 39.5
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.3e-28 129.8 261 39.5
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-28 129.4 221 42.5
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-28 129.4 242 39.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-28 129.4 221 42.5
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 9.6e-28 128.3 239 42.3
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.3e-27 127.9 246 39.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.1e-27 127.1 247 40.9
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 6.2e-27 125.6 242 38.8
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-26 124.4 238 39.9
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.4e-26 124.4 238 40.8
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.8e-26 124.0 246 42.3
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.3e-26 122.5 237 39.7
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 5.3e-26 122.5 259 38.6
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 6.9e-26 122.1 248 39.5
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 9.0e-26 121.7 270 39.6
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.2e-25 121.3 230 50.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.5e-25 120.9 223 39.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.0e-25 120.6 232 41.4
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.0e-25 120.6 241 38.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.0e-25 120.6 225 39.6
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.0e-24 118.2 254 37.8
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.3e-24 117.9 251 37.8
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.3e-24 117.9 243 39.5
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.7e-24 117.5 220 44.5
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.7e-24 117.5 243 39.1
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.9e-24 116.7 239 40.6
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 6.5e-24 115.5 116 56.0
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-23 114.8 232 40.1
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.4e-23 114.4 246 43.9
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.5e-23 113.6 255 42.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 7.1e-23 112.1 230 39.6
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.2e-22 111.3 225 36.9
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.6e-22 110.9 259 35.1
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.6e-22 110.9 230 42.6
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.8e-21 107.5 266 36.5
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 6.7e-21 105.5 239 38.9
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.1e-20 104.8 229 37.1
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.5e-20 104.4 240 36.7
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.9e-20 104.0 264 35.2
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.7e-20 102.4 254 37.4
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.6e-19 100.9 255 35.7
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.2e-19 100.5 247 36.0
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 3.7e-19 99.8 243 37.0
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 8.2e-19 98.6 118 52.5
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 8.2e-19 98.6 242 37.6
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 8.2e-19 98.6 241 36.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 8.2e-19 98.6 245 34.3
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.1e-18 98.2 254 37.4
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-18 97.8 221 37.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.8e-18 97.4 243 32.9
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.8e-18 97.4 270 34.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.4e-18 97.1 204 46.1
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 3.1e-18 96.7 238 37.0
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.1e-18 96.3 243 35.4
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.3e-18 95.9 248 33.1
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 9.0e-18 95.1 274 34.3
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 9.0e-18 95.1 274 34.3
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 3.4e-17 93.2 251 36.7
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 3.4e-17 93.2 291 31.6
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 3.4e-17 93.2 261 35.6
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.5e-17 92.8 218 37.2
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 7.7e-17 92.0 226 35.0
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.0e-16 91.7 220 34.5
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.7e-16 90.9 256 35.5
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.7e-16 90.9 274 33.6
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.9e-16 90.1 274 33.6
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.9e-16 90.1 274 33.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.8e-16 89.7 279 32.6
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 3.8e-16 89.7 251 33.5
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 5.0e-16 89.4 222 34.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 5.0e-16 89.4 222 34.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 8.5e-16 88.6 231 36.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.4e-15 87.8 238 38.2
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 3.2e-15 86.7 254 34.6
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 7.2e-15 85.5 249 40.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 9.4e-15 85.1 237 35.0
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.1e-14 84.0 228 36.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 7.9e-14 82.0 215 36.7
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.0e-13 81.6 272 34.6
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.8e-13 80.9 238 34.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.0e-13 80.1 77 59.7
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 2.5e-12 77.0 125 41.6
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 2.5e-12 77.0 117 43.6
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 7.4e-12 75.5 237 34.2
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 7.4e-12 75.5 124 44.4
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.2e-11 72.0 213 32.9
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 1.8e-10 70.9 105 49.5
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 3.1e-10 70.1 233 33.0
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.1e-10 69.7 63 60.3
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.1e-10 69.7 70 57.1
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.9e-10 68.9 209 39.7
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.6e-09 67.0 78 53.8
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 2.6e-09 67.0 279 31.2
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 1.7e-08 64.3 107 45.8
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 1.7e-08 64.3 65 58.5
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 2.2e-08 63.9 83 49.4
Zm00001eb038100 Zea mays HOM05D004504 ORTHO05D005324 3.8e-08 63.2 132 37.9
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 5.0e-08 62.8 82 51.2
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 5.0e-08 62.8 48 66.7
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 1.1e-07 61.6 113 43.4
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.1e-07 61.6 113 43.4
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 2.5e-07 60.5 115 42.6
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.5e-07 60.5 237 27.8
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 3.2e-07 60.1 50 64.0
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 5.5e-07 59.3 210 30.5
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.5e-07 59.3 83 49.4
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.2e-06 58.2 68 50.0
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 4.7e-06 56.2 94 44.7
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.1e-06 55.8 73 56.2
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 6.1e-06 55.8 131 38.2
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 7.9e-06 55.5 149 34.2


User provided reference genes

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