Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006180 Simmondsia chinensis HOM05D027605 ORTHO05D001429 4.7e-57 224.2 103 100.0
Sc15g0006260 Simmondsia chinensis HOM05D027605 ORTHO05D001429 1.0e-48 196.4 100 93.0
Sc15g0006170 Simmondsia chinensis HOM05D027605 ORTHO05D001429 1.7e-22 109.4 80 71.2
Sc15g0006250 Simmondsia chinensis HOM05D027605 ORTHO05D001429 1.9e-21 105.9 79 70.9
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.4e-13 79.7 91 48.4
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 3.2e-13 78.6 91 48.4
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-12 75.9 81 46.9
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-12 75.9 81 45.7
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-12 75.9 81 45.7
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.5e-12 75.1 81 44.4
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.5e-12 75.1 85 43.5
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.6e-12 74.7 82 43.9
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 6.0e-12 74.3 77 46.8
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 6.0e-12 74.3 81 45.7
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.8e-12 73.9 81 45.7
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-11 73.6 79 45.6
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 1.3e-11 73.2 82 45.1
Nitab4.5_0006312g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.3e-11 73.2 79 43.0
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 2.3e-11 72.4 77 49.4
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.0e-11 72.0 81 44.4
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.9e-11 71.6 79 43.0
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 5.1e-11 71.2 83 43.4
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 5.1e-11 71.2 81 44.4
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.1e-11 71.2 82 43.9
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-11 70.9 79 44.3
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 1.1e-10 70.1 82 43.9
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 1.1e-10 70.1 77 44.2
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.5e-10 69.7 79 41.8
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-10 69.7 78 44.9
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-10 69.7 81 43.2
Nitab4.5_0013573g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-10 69.7 72 47.2
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.9e-10 69.3 79 41.8
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.9e-10 69.3 79 41.8
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.5e-10 68.9 80 40.0
CAN.G371.25 Capsicum annuum HOM05D000955 ORTHO05D001429 2.5e-10 68.9 79 43.0
PGSC0003DMG400008042 Solanum tuberosum HOM05D000955 ORTHO05D001429 2.5e-10 68.9 81 44.4
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.3e-10 68.6 76 43.4
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 3.3e-10 68.6 77 44.2
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.3e-10 68.2 79 43.0
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 4.3e-10 68.2 85 41.2
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.6e-10 67.8 80 38.8
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 5.6e-10 67.8 80 42.5
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 5.6e-10 67.8 79 43.0
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 7.3e-10 67.4 78 43.6
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 9.6e-10 67.0 78 39.7
Atru.chr13.663 Acer truncatum HOM05D000955 ORTHO05D001429 1.3e-09 66.6 83 41.0
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.3e-09 66.6 80 38.8
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 1.3e-09 66.6 81 43.2
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.3e-09 66.6 93 38.7
CsaV3_2G027840 Cucumis sativus L. HOM05D000955 ORTHO05D001429 1.3e-09 66.6 89 40.4
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.3e-09 66.6 86 37.2
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 1.6e-09 66.2 101 37.6
PGSC0003DMG400008043 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.6e-09 66.2 72 47.2
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-09 65.9 83 36.1
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 2.1e-09 65.9 77 41.6
Atru.chr13.666 Acer truncatum HOM05D000955 ORTHO05D001429 2.8e-09 65.5 82 41.5
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 2.8e-09 65.5 79 39.2
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.6e-09 65.1 80 37.5
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.6e-09 65.1 83 39.8
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 3.6e-09 65.1 80 41.2
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 3.6e-09 65.1 82 39.0
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.6e-09 65.1 82 40.2
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.8e-09 64.7 80 38.8
Nitab4.5_0015075g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.8e-09 64.7 81 42.0
Peaxi162Scf01890g00010 Petunia axillaris HOM05D000955 ORTHO05D001429 4.8e-09 64.7 83 41.0
Atru.chr13.664 Acer truncatum HOM05D000955 ORTHO05D002259 6.2e-09 64.3 79 41.8
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 6.2e-09 64.3 78 38.5
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 6.2e-09 64.3 86 38.4
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 6.2e-09 64.3 79 35.4
Nitab4.5_0001847g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.2e-09 64.3 79 41.8
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 6.2e-09 64.3 81 38.3
Sopen04g032650 Solanum pennellii HOM05D000955 ORTHO05D001429 6.2e-09 64.3 72 47.2
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 6.2e-09 64.3 82 41.5
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 6.2e-09 64.3 77 40.3
vmacro23310 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 8.1e-09 63.9 104 35.6
Rhsim07G0228800 Rhododendron simsii HOM05D000955 ORTHO05D001429 1.1e-08 63.5 89 40.4
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 1.4e-08 63.2 82 39.0
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 1.4e-08 63.2 78 42.3
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 1.4e-08 63.2 79 39.2
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.8e-08 62.8 82 36.6
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 2.4e-08 62.4 77 40.3
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.4e-08 62.4 82 36.6
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.4e-08 62.4 85 42.4
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 2.4e-08 62.4 77 40.3
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 2.4e-08 62.4 93 39.8
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 2.4e-08 62.4 80 38.8
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.1e-08 62.0 97 37.1
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 3.1e-08 62.0 87 34.5
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 5.3e-08 61.2 82 35.4
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 6.9e-08 60.8 78 39.7
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.9e-08 60.8 79 40.5
Nitab4.5_0010940g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.9e-08 60.8 76 42.1
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 6.9e-08 60.8 81 37.0
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 6.9e-08 60.8 81 39.5
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.0e-08 60.5 76 39.5
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 1.2e-07 60.1 79 40.5
Manes.04G102000 Manihot esculenta HOM05D000955 ORTHO05D001429 1.2e-07 60.1 87 36.8
Manes.04G102800 Manihot esculenta HOM05D000955 ORTHO05D001429 1.2e-07 60.1 87 35.6
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 1.2e-07 60.1 87 35.6
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 1.2e-07 60.1 78 34.6
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.2e-07 60.1 83 36.1
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-07 59.7 65 44.6
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.5e-07 59.7 77 41.6
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 1.5e-07 59.7 83 33.7
Nitab4.5_0001847g0020 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-07 59.7 81 38.3
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.0e-07 59.3 77 40.3
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.0e-07 59.3 77 36.4
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 2.6e-07 58.9 83 32.5
Actinidia22623 Actinidia chinensis HOM05D000955 ORTHO05D001429 2.6e-07 58.9 75 38.7
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 2.6e-07 58.9 84 33.3
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 2.6e-07 58.9 80 33.8
Cpa.g.sc49.10 Carica papaya HOM05D000955 ORTHO05D001429 3.4e-07 58.5 77 36.4
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 3.4e-07 58.5 72 38.9
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 3.4e-07 58.5 88 38.6
Manes.04G103100 Manihot esculenta HOM05D000955 ORTHO05D001429 3.4e-07 58.5 87 34.5
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-07 58.2 84 36.9
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.5e-07 58.2 84 36.9
HanXRQChr09g0267701 Helianthus annuus HOM05D000955 ORTHO05D001429 4.5e-07 58.2 81 32.1
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 4.5e-07 58.2 82 37.8
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 5.8e-07 57.8 88 36.4
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.6e-07 57.4 84 36.9
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.6e-07 57.4 79 36.7
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.6e-07 57.4 79 36.7
Manes.04G103000 Manihot esculenta HOM05D000955 ORTHO05D001429 7.6e-07 57.4 87 33.3
Medtr1g019600 Medicago truncatula HOM05D000955 ORTHO05D001429 7.6e-07 57.4 83 39.8
TWI36G1204 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 7.6e-07 57.4 70 41.4
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 9.9e-07 57.0 77 39.0
Nitab4.5_0001722g0010 Nicotiana tabacum HOM05D001454 ORTHO05D001429 9.9e-07 57.0 79 38.0
Phvul.001G021600 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 9.9e-07 57.0 88 31.8
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.3e-06 56.6 79 35.4
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.3e-06 56.6 79 35.4
COL.COLO4_26495 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.7e-06 56.2 82 31.7
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 1.7e-06 56.2 82 32.9
Thecc.08G009800 Theobroma cacao HOM05D000955 ORTHO05D001429 1.7e-06 56.2 82 36.6
Sopen04g032680 Solanum pennellii HOM05D000955 ORTHO05D001429 2.2e-06 55.8 83 33.7
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 2.9e-06 55.5 81 39.5
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 2.9e-06 55.5 81 39.5
Manes.18G036200 Manihot esculenta HOM05D000955 ORTHO05D001429 2.9e-06 55.5 81 33.3
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 75 36.0
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 3.8e-06 55.1 69 39.1
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 3.8e-06 55.1 77 40.3
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 3.8e-06 55.1 77 39.0
Lsat_1_v5_gn_4_125340 Lactuca sativa HOM05D000955 ORTHO05D001429 3.8e-06 55.1 85 34.1
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 3.8e-06 55.1 77 36.4
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 3.8e-06 55.1 85 32.9
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 3.8e-06 55.1 65 35.4
Cpa.g.sc49.9 Carica papaya HOM05D000955 ORTHO05D001429 4.9e-06 54.7 77 33.8
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 6.4e-06 54.3 77 39.0
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 6.4e-06 54.3 77 39.0
VMungo0647G0935 Vigna mungo HOM05D000955 ORTHO05D001429 6.4e-06 54.3 76 32.9
Cfa018538 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.4e-06 53.9 85 36.5
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 8.4e-06 53.9 77 35.1


User provided reference genes

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