Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 6.8e-35 150.2 81 100.0
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 4.7e-20 100.9 81 71.6
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 1.2e-18 96.3 81 71.6
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.2e-18 96.3 81 70.4
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.2e-17 92.0 77 66.2
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 8.3e-17 90.1 81 67.9
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 1.1e-16 89.7 75 65.3
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 1.9e-16 89.0 77 63.6
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.9e-16 89.0 78 64.1
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 5.4e-16 87.4 78 64.1
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 5.4e-16 87.4 77 63.6
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 9.2e-16 86.7 78 62.8
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 1.2e-15 86.3 78 62.8
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 2.0e-15 85.5 78 62.8
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.0e-15 85.5 78 62.8
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 2.0e-15 85.5 83 63.9
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.7e-15 85.1 77 61.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 6.0e-15 84.0 78 60.3
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 7.8e-15 83.6 67 64.2
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 1.3e-14 82.8 78 60.3
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.7e-14 82.4 81 61.7
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.3e-14 82.0 70 65.7
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 2.3e-14 82.0 77 59.7
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 2.3e-14 82.0 77 58.4
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 2.3e-14 82.0 81 59.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 3.0e-14 81.6 78 59.0
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 3.9e-14 81.3 77 61.0
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 5.0e-14 80.9 77 55.8
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 5.0e-14 80.9 78 55.1
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 6.6e-14 80.5 81 59.3
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 6.6e-14 80.5 76 59.2
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 8.6e-14 80.1 77 59.7
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.1e-13 79.7 78 59.0
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 1.1e-13 79.7 77 58.4
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.1e-13 79.7 78 59.0
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.1e-13 79.7 78 55.1
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.1e-13 79.7 78 57.7
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.5e-13 79.3 76 59.2
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.5e-13 79.3 78 56.4
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.9e-13 79.0 78 57.7
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 2.5e-13 78.6 78 59.0
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.5e-13 78.6 76 56.6
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 3.3e-13 78.2 62 67.7
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 3.3e-13 78.2 78 56.4
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 3.3e-13 78.2 77 57.1
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 4.3e-13 77.8 76 55.3
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 5.6e-13 77.4 76 55.3
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 7.3e-13 77.0 78 57.7
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 7.3e-13 77.0 78 53.8
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 7.3e-13 77.0 76 56.6
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 9.5e-13 76.6 78 57.7
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 9.5e-13 76.6 76 56.6
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 9.5e-13 76.6 76 59.2
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.6e-12 75.9 78 57.7
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 2.1e-12 75.5 55 69.1
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.1e-12 75.5 78 55.1
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 3.6e-12 74.7 78 55.1
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 8.1e-12 73.6 78 53.8
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 8.1e-12 73.6 77 53.2
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.1e-11 73.2 78 52.6
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.4e-11 72.8 78 55.1
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.8e-11 72.4 76 56.6
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.8e-11 72.4 80 58.8
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.3e-11 72.0 81 55.6
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 6.8e-11 70.5 98 49.0
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 8.9e-11 70.1 78 55.1
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 4.4e-10 67.8 77 57.1
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 4.4e-10 67.8 75 53.3
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 5.8e-10 67.4 78 52.6
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 9.9e-10 66.6 77 51.9
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 9.9e-10 66.6 78 51.3
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 9.9e-10 66.6 52 69.2
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.3e-09 66.2 78 53.8
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.7e-09 65.9 78 48.7
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.2e-09 65.5 77 50.6
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 2.9e-09 65.1 88 45.5
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 4.9e-09 64.3 77 51.9
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 4.9e-09 64.3 81 50.6
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 4.9e-09 64.3 78 51.3
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.3e-09 63.5 81 50.6
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 8.3e-09 63.5 81 50.6
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 3.2e-08 61.6 81 49.4


User provided reference genes

Program Settings