Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0005110 Simmondsia chinensis HOM05D006698 ORTHO05D008415 5.1e-232 807.4 402 100.0
Hund24100 Selenicereus undatus HOM05D006698 ORTHO05D008415 4.6e-140 501.9 401 61.6
EL10Ac1g02260 Beta vulgaris HOM05D006698 ORTHO05D008415 5.9e-140 501.5 400 61.0
AUR62035724 Chenopodium quinoa HOM05D006698 ORTHO05D008415 5.6e-138 495.0 400 60.5
Ah.11g039450 Amaranthus hybridus HOM05D006698 ORTHO05D008415 4.0e-136 488.8 401 59.6
GSVIVG01009862001 Vitis vinifera HOM05D006698 ORTHO05D008415 3.1e-128 462.6 400 56.5
Prupe.1G368700 Prunus persica HOM05D006698 ORTHO05D008415 8.3e-126 454.5 400 54.5
TWI12G1415 Tripterygium wilfordii HOM05D006698 ORTHO05D008415 2.7e-124 449.5 400 56.0
Ciclev10000799m.g Citrus clementina HOM05D006698 ORTHO05D008415 4.3e-122 442.2 400 55.0
Potri.005G236400 Populus trichocarpa HOM05D006698 ORTHO05D008415 5.6e-122 441.8 401 54.4
Cfa013924 Carpinus fangiana HOM05D006698 ORTHO05D008415 2.8e-121 439.5 400 54.2
CiPaw.09G133200 Carya illinoinensis HOM05D006698 ORTHO05D008415 3.6e-121 439.1 400 53.8
QL02p011012 Quercus lobata HOM05D006698 ORTHO05D008415 6.8e-120 434.9 403 53.6
CSS0038613 Camellia sinensis var. sinensis HOM05D006698 ORTHO05D008415 1.2e-119 434.1 400 53.8
Sabra05G0182800 Salix brachista HOM05D006698 ORTHO05D008415 2.6e-119 433.0 401 53.4
TAR628G0086 Trochodendron aralioides HOM05D006698 ORTHO05D008415 3.4e-119 432.6 401 52.1
Thecc.08G041000 Theobroma cacao HOM05D006698 ORTHO05D008415 2.2e-118 429.9 400 53.2
MD09G1232000 Malus domestica HOM05D006698 ORTHO05D008415 2.9e-118 429.5 403 53.8
Actinidia16966 Actinidia chinensis HOM05D006698 ORTHO05D008415 6.4e-118 428.3 400 53.8
CARHR262700 Cardamine hirsuta HOM05D006698 ORTHO05D008415 5.4e-117 425.2 402 51.2
Gorai.002G124600 Gossypium raimondii HOM05D006698 ORTHO05D008415 7.1e-117 424.9 403 52.4
BraA04t16897Z Brassica rapa HOM05D006698 ORTHO05D008415 9.2e-117 424.5 402 52.0
A04p12330 Brassica napus HOM05D006698 ORTHO05D008415 2.7e-116 422.9 402 51.5
Haze_22605 Corylus avellana HOM05D006698 ORTHO05D008415 2.7e-116 422.9 426 50.0
Duzib093G0690 Durio zibethinus HOM05D006698 ORTHO05D008415 6.0e-116 421.8 400 53.2
Lj4A795T33 Lonicera japonica HOM05D006698 ORTHO05D008415 6.0e-116 421.8 400 51.2
THA.LOC104823101 Tarenaya hassleriana HOM05D006698 ORTHO05D008415 7.8e-116 421.4 400 52.0
BolC4t26182H Brassica oleracea HOM05D006698 ORTHO05D008415 1.3e-115 420.6 402 51.5
C04p46000 Brassica napus HOM05D006698 ORTHO05D008415 1.7e-115 420.2 402 51.5
BcaB06g27346 Brassica carinata HOM05D006698 ORTHO05D008415 3.0e-115 419.5 401 51.4
Gohir.A01G112500 Gossypium hirsutum HOM05D006698 ORTHO05D008415 6.6e-115 418.3 403 51.9
AT5G39590 Arabidopsis thaliana HOM05D006698 ORTHO05D008415 7.3e-114 414.8 403 51.6
Gohir.D01G099300 Gossypium hirsutum HOM05D006698 ORTHO05D008415 9.6e-114 414.5 403 51.4
AUR62035437 Chenopodium quinoa HOM05D006698 ORTHO05D008415 2.8e-113 412.9 321 61.1
Sp7g02400 Schrenkiella parvula HOM05D006698 ORTHO05D008415 3.6e-113 412.5 402 51.0
AL7G50720 Arabidopsis lyrata HOM05D006698 ORTHO05D008415 4.7e-113 412.1 403 50.6
Nn6g32301 Nelumbo nucifera HOM05D006698 ORTHO05D008415 6.2e-113 411.8 400 51.2
Carub.0007s3635 Capsella rubella HOM05D006698 ORTHO05D008415 1.2e-111 407.5 403 49.4
RcHm_v2.0_Chr6g0302501 Rosa chinensis HOM05D006698 ORTHO05D008415 3.4e-111 406.0 401 51.1
Cpa.g.sc14.105 Carica papaya HOM05D006698 ORTHO05D008415 1.3e-110 404.1 403 51.1
Rhsim06G0023700 Rhododendron simsii HOM05D006698 ORTHO05D008415 3.8e-110 402.5 401 50.9
Aa31LG9G16490 Aethionema arabicum HOM05D006698 ORTHO05D008415 8.4e-110 401.4 418 47.6
Eucgr.F01632 Eucalyptus grandis HOM05D006698 ORTHO05D008415 7.1e-109 398.3 401 49.1
FAN27G1564 Fragaria x ananassa HOM05D006698 ORTHO05D008415 7.8e-108 394.8 400 50.2
MELO3C003770.2 Cucumis melo HOM05D006698 ORTHO05D008415 3.0e-107 392.9 400 48.0
FAN15G2932 Fragaria x ananassa HOM05D006698 ORTHO05D008415 3.0e-107 392.9 400 49.5
FvH4_2g38790 Fragaria vesca HOM05D006698 ORTHO05D008415 5.1e-107 392.1 400 49.8
Aqoxy5G01450 Aquilegia oxysepala HOM05D006698 ORTHO05D008415 6.6e-107 391.7 403 47.6
PGR083G1075 Punica granatum HOM05D006698 ORTHO05D008415 6.6e-107 391.7 405 50.6
Oeu027550.1 Olea europaea HOM05D006698 ORTHO05D008415 1.9e-106 390.2 402 51.5
CsaV3_3G045670 Cucumis sativus L. HOM05D006698 ORTHO05D008415 1.6e-105 387.1 400 47.2
DCAR_009935 Daucus carota HOM05D006698 ORTHO05D008415 6.2e-105 385.2 400 49.0
MSTRG.22331 Avicennia marina HOM05D006698 ORTHO05D008415 1.1e-104 384.4 402 48.3
arahy.Tifrunner.gnm1.ann1.32JQZQ Arachis hypogaea HOM05D006698 ORTHO05D008415 2.4e-104 383.3 400 47.8
arahy.Tifrunner.gnm1.ann1.HU0S2W Arachis hypogaea HOM05D006698 ORTHO05D008415 2.4e-104 383.3 400 47.8
PGSC0003DMG400003770 Solanum tuberosum HOM05D006698 ORTHO05D008415 3.1e-104 382.9 400 49.0
vmacro21711 Vaccinium macrocarpon HOM05D006698 ORTHO05D008415 5.3e-104 382.1 423 46.6
MBI09_g13764_MAGBIO Magnolia biondii HOM05D006698 ORTHO05D008415 9.0e-104 381.3 385 49.6
CANSAT35G1394 Cannabis sativa HOM05D006698 ORTHO05D008415 1.5e-103 380.6 402 47.0
Sopen04g034840 Solanum pennellii HOM05D006698 ORTHO05D008415 3.4e-103 379.4 400 48.2
Glyma.04G215400 Glycine max HOM05D006698 ORTHO05D008415 4.5e-103 379.0 400 49.0
PSO170G5361 Papaver somniferum HOM05D006698 ORTHO05D008415 7.6e-103 378.3 401 46.9
PSO170G6283 Papaver somniferum HOM05D006698 ORTHO05D008415 9.9e-103 377.9 410 48.0
Migut.N03146 Erythranthe guttata HOM05D006698 ORTHO05D008415 1.7e-102 377.1 402 47.5
Solyc04g081230.3 Solanum lycopersicum HOM05D006698 ORTHO05D008415 3.8e-102 375.9 400 48.5
PSO210G5790 Papaver somniferum HOM05D006698 ORTHO05D008415 8.4e-102 374.8 401 46.9
Lj1g0011928 Lotus japonicus HOM05D006698 ORTHO05D008415 1.1e-101 374.4 403 47.4
PSO210G1198 Papaver somniferum HOM05D006698 ORTHO05D008415 1.4e-101 374.0 410 47.8
Thhalv10027724m.g Eutrema salsugineum HOM05D006698 ORTHO05D008415 2.4e-101 373.2 401 47.6
CAN.G1271.13 Capsicum annuum HOM05D006698 ORTHO05D008415 7.1e-101 371.7 400 48.2
SGA_v2.0_scaffold47G17495 Striga asiatica HOM05D006698 ORTHO05D008415 7.1e-101 371.7 404 46.8
Sed0002694 Sechium edule HOM05D006698 ORTHO05D008415 1.6e-100 370.5 401 45.6
TPR.G18731 Trifolium pratense HOM05D006698 ORTHO05D008415 4.6e-100 369.0 400 46.0
Cc10_g01920 Coffea canephora HOM05D006698 ORTHO05D008415 2.3e-99 366.7 461 44.5
ECA238G1455 Erigeron canadensis HOM05D006698 ORTHO05D008415 2.3e-99 366.7 400 47.0
Atru.chr13.326 Acer truncatum HOM05D006698 ORTHO05D008415 3.0e-99 366.3 330 56.7
HanXRQChr04g0101141 Helianthus annuus HOM05D006698 ORTHO05D008415 6.7e-99 365.2 400 46.2
Phvul.009G147800 Phaseolus vulgaris HOM05D006698 ORTHO05D008415 9.6e-98 361.3 400 45.2
VMungo1309G0200 Vigna mungo HOM05D006698 ORTHO05D008415 2.1e-97 360.1 400 44.2
ClCG05G018510 Citrullus lanatus HOM05D006698 ORTHO05D008415 4.8e-97 359.0 400 44.8
Peaxi162Scf00287g01719 Petunia axillaris HOM05D006698 ORTHO05D008415 6.2e-97 358.6 402 48.3
Lsat_1_v5_gn_2_11660 Lactuca sativa HOM05D006698 ORTHO05D008415 6.9e-96 355.1 400 47.2
Lalb_Chr08g0238541 Lupinus albus HOM05D006698 ORTHO05D008415 5.8e-95 352.1 401 44.4
Psat5g063280 Pisum sativum HOM05D006698 ORTHO05D008415 2.9e-94 349.7 400 43.2
Ca_16921_v3 Cicer arietinum L. HOM05D006698 ORTHO05D008415 6.4e-94 348.6 400 43.8
Oeu027551.1 Olea europaea HOM05D006698 ORTHO05D008415 1.6e-92 344.0 351 50.1
Nitab4.5_0001988g0020 Nicotiana tabacum HOM05D006698 ORTHO05D008415 5.6e-90 335.5 352 47.7
Medtr3g095660 Medicago truncatula HOM05D006698 ORTHO05D008415 7.4e-90 335.1 401 43.9
FAN20G0171 Fragaria x ananassa HOM05D006698 ORTHO05D008415 4.8e-89 332.4 492 39.4
SalBow8G5338 Salvia bowleyana HOM05D006698 ORTHO05D008415 9.0e-88 328.2 451 41.2
ATR0147G003 Amborella trichopoda HOM05D006698 ORTHO05D008415 1.2e-79 301.2 393 43.8
Manes.18G015700 Manihot esculenta HOM05D006698 ORTHO05D008415 2.9e-78 296.6 289 52.2
HPP92_014935 Vanilla planifolia HOM05D006698 ORTHO05D008415 3.9e-75 286.2 403 40.2
SHI08084 Sapria himalayana HOM05D006698 ORTHO05D008415 4.5e-71 272.7 416 39.2
CDE09G0091 Ceratophyllum demersum HOM05D006698 ORTHO05D008415 5.9e-71 272.3 329 46.8
Dinv31825 Davidia involucrata HOM05D006698 ORTHO05D008415 1.4e-64 251.1 401 40.6
Zm00001eb067290 Zea mays HOM05D006698 ORTHO05D008415 1.6e-60 237.7 425 37.6
Os04g0663700 Oryza sativa ssp. japonica HOM05D006698 ORTHO05D008415 1.1e-56 224.9 416 36.5
Potri.002G024966 Populus trichocarpa HOM05D006698 ORTHO05D008415 6.7e-51 205.7 182 53.8
SEGI_26467 Sequoiadendron giganteum HOM05D006698 ORTHO05D008415 2.6e-50 203.8 352 34.4
Potri.002G025032 Populus trichocarpa HOM05D006698 ORTHO05D008415 3.7e-49 199.9 170 59.4
unitig_27.g25098 Utricularia gibba HOM05D006698 ORTHO05D008415 1.6e-47 194.5 254 39.4
Pp3c16_7090 Physcomitrium patens HOM05D006698 ORTHO05D008415 2.2e-46 190.7 411 30.9
Glyma.06G150801 Glycine max HOM05D006698 ORTHO05D008415 3.1e-40 170.2 170 50.6
Pp3c5_11350 Physcomitrium patens HOM05D006698 ORTHO05D008415 4.1e-40 169.9 412 29.6
AagrBONN_evm.TU.Sc2ySwM_344.812 Anthoceros agrestis HOM05D006698 ORTHO05D008415 2.1e-36 157.5 435 30.6
AagrBONN_evm.TU.Sc2ySwM_344.842 Anthoceros agrestis HOM05D006698 ORTHO05D008415 3.6e-36 156.8 435 30.6
Mapoly0043s0042 Marchantia polymorpha HOM05D006698 ORTHO05D008415 4.9e-33 146.4 437 28.6
SMO145G0265 Selaginella moellendorffii HOM05D006698 ORTHO05D008415 3.6e-28 130.2 329 28.9
HanXRQChr05g0147331 Helianthus annuus HOM05D006698 ORTHO05D008415 1.1e-24 118.6 120 41.7
unitig_27.g25099 Utricularia gibba HOM05D006698 ORTHO05D008415 3.9e-22 110.2 82 62.2
Medtr7g098720 Medicago truncatula HOM05D006698 ORTHO05D008415 2.0e-18 97.8 124 40.3
Cpa.g.sc14.104 Carica papaya HOM05D006698 ORTHO05D008415 4.9e-17 93.2 129 40.3
Oeu046256.1 Olea europaea HOM05D006698 ORTHO05D008415 4.4e-10 70.1 48 60.4
QL03p018243 Quercus lobata HOM05D006698 ORTHO05D008415 1.3e-06 58.5 55 54.5
MBI06_g37498_MAGBIO Magnolia biondii HOM05D002910 ORTHO05D030039 1.7e-06 58.2 94 34.0


User provided reference genes

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