Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 1.8e-54 215.7 108 100.0
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 1.2e-23 113.2 96 59.4
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 4.4e-21 104.8 100 58.0
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 9.7e-21 103.6 101 58.4
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 6.3e-20 100.9 93 57.0
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 8.2e-20 100.5 94 61.7
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 1.8e-19 99.4 92 60.9
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 9.1e-19 97.1 93 61.3
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 1.2e-18 96.7 90 61.1
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 1.2e-18 96.7 93 59.1
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 1.5e-18 96.3 91 53.8
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 1.5e-18 96.3 91 61.5
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 2.6e-18 95.5 94 58.5
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 3.4e-18 95.1 94 56.4
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 3.4e-18 95.1 91 60.4
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 5.9e-18 94.4 81 63.0
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 5.9e-18 94.4 94 55.3
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 7.7e-18 94.0 101 50.5
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.3e-17 93.2 94 55.3
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 1.7e-17 92.8 90 57.8
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.7e-17 92.8 94 56.4
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 2.9e-17 92.0 94 58.5
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 3.8e-17 91.7 91 60.4
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 3.8e-17 91.7 93 55.9
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 8.5e-17 90.5 91 52.7
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 1.1e-16 90.1 95 53.7
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.1e-16 90.1 94 55.3
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.4e-16 89.7 87 55.2
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 1.9e-16 89.4 79 60.8
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 3.2e-16 88.6 90 56.7
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 5.5e-16 87.8 93 53.8
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.5e-16 87.8 93 53.8
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 9.4e-16 87.0 90 55.6
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 9.4e-16 87.0 93 53.8
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.2e-15 86.7 93 52.7
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.6e-15 86.3 91 56.0
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.6e-15 86.3 91 56.0
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 1.6e-15 86.3 93 54.8
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 2.1e-15 85.9 90 54.4
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 2.7e-15 85.5 99 54.5
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 2.7e-15 85.5 91 57.1
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 3.6e-15 85.1 112 50.0
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 4.7e-15 84.7 95 52.6
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 4.7e-15 84.7 92 48.9
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 6.1e-15 84.3 93 57.0
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 8.0e-15 84.0 80 56.2
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 1.0e-14 83.6 84 53.6
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.0e-14 83.6 90 50.0
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.4e-14 83.2 88 55.7
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.4e-14 83.2 88 55.7
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 1.8e-14 82.8 93 50.5
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 2.3e-14 82.4 91 54.9
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 3.0e-14 82.0 85 52.9
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 3.0e-14 82.0 85 52.9
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 3.0e-14 82.0 88 52.3
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 3.9e-14 81.6 100 47.0
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 6.7e-14 80.9 72 58.3
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 8.8e-14 80.5 77 57.1
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 1.1e-13 80.1 73 57.5
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 1.5e-13 79.7 106 43.4
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 1.5e-13 79.7 106 43.4
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 2.0e-13 79.3 79 55.7
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 3.3e-13 78.6 80 55.0
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 4.4e-13 78.2 91 50.5
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 7.4e-13 77.4 91 51.6
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.7e-12 76.3 93 48.4
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 3.7e-12 75.1 107 41.1
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 4.8e-12 74.7 107 41.1
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 4.8e-12 74.7 107 41.1
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 6.3e-12 74.3 97 45.4
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 8.2e-12 73.9 78 53.8
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 1.4e-11 73.2 82 53.7
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.8e-11 72.8 94 47.9
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 2.4e-11 72.4 96 45.8
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 3.1e-11 72.0 91 46.2
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 4.1e-11 71.6 97 50.5
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 5.3e-11 71.2 92 47.8
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 9.1e-11 70.5 93 47.3
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 2.0e-10 69.3 108 42.6
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 2.0e-10 69.3 96 46.9
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 5.9e-10 67.8 76 50.0
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 7.7e-10 67.4 93 50.5
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 1.0e-09 67.0 78 50.0
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 1.0e-09 67.0 96 43.8
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 2.2e-09 65.9 81 53.1
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.9e-09 65.5 96 45.8
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 6.5e-09 64.3 79 50.6
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 6.5e-09 64.3 78 53.8
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 6.5e-09 64.3 78 53.8
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 6.5e-09 64.3 91 51.6
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 8.5e-09 63.9 80 53.8
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.1e-08 63.5 79 53.2
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 4.2e-08 61.6 95 43.2
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 5.5e-08 61.2 78 51.3
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 5.5e-08 61.2 78 52.6
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 5.5e-08 61.2 78 52.6
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 9.4e-08 60.5 77 54.5
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 1.6e-07 59.7 79 50.6
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 2.7e-07 58.9 75 42.7
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 2.7e-07 58.9 74 54.1
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 3.6e-07 58.5 79 50.6
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 3.6e-07 58.5 79 50.6
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 8.0e-07 57.4 76 52.6


User provided reference genes

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