Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 4.7e-162 574.7 342 100.0
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.1e-41 174.9 365 44.9
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 9.2e-41 171.8 403 40.4
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.3e-39 167.2 371 37.7
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.2e-37 159.1 395 41.8
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.1e-36 158.3 359 40.4
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.8e-35 152.5 359 40.1
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.1e-32 144.1 359 40.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-31 141.4 354 36.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 5.6e-30 136.0 355 39.4
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.6e-30 136.0 347 39.5
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 2.8e-29 133.7 375 41.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.8e-28 131.0 363 38.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 5.2e-28 129.4 348 38.2
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.5e-27 127.9 348 36.5
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 8.3e-26 122.1 351 36.2
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.4e-25 121.3 342 36.5
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.1e-25 119.8 357 36.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.2e-24 118.2 382 39.0
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.6e-24 117.9 356 34.0
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.1e-24 117.5 356 36.0
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.1e-23 112.8 364 37.1
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 8.6e-23 112.1 390 38.5
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 2.5e-22 110.5 373 37.8
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.3e-22 109.8 422 33.6
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 3.6e-21 106.7 363 37.7
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.1e-20 105.1 407 35.9
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.8e-20 104.4 379 33.0
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.1e-20 103.6 349 34.7
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 4.0e-20 103.2 221 48.4
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 6.8e-20 102.4 387 35.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.2e-19 101.7 353 34.8
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.2e-19 101.7 345 33.0
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 2.0e-19 100.9 175 56.6
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 2.0e-19 100.9 344 36.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 2.0e-19 100.9 345 36.2
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.6e-19 100.5 358 33.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.4e-19 100.1 354 31.4
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 4.4e-19 99.8 380 36.1
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.3e-18 98.2 368 37.0
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 4.9e-18 96.3 337 35.6
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 4.9e-18 96.3 346 35.3
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 8.4e-18 95.5 347 34.6
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 1.1e-17 95.1 394 35.0
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-17 95.1 352 32.4
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.4e-17 94.7 255 33.3
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 1.4e-17 94.7 368 34.2
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 3.2e-17 93.6 258 43.4
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 4.2e-17 93.2 384 33.6
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.2e-17 93.2 342 33.3
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 7.1e-17 92.4 344 34.0
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 9.2e-17 92.0 351 28.8
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 9.2e-17 92.0 350 34.9
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 9.2e-17 92.0 343 35.9
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-16 91.7 363 34.7
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-16 91.7 362 33.4
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 1.6e-16 91.3 162 54.9
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 2.1e-16 90.9 349 36.1
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.7e-16 90.5 366 34.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.7e-16 90.5 352 30.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.7e-16 90.5 358 33.0
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.7e-16 90.5 248 32.7
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 3.5e-16 90.1 356 34.0
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 4.6e-16 89.7 370 31.1
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 7.8e-16 89.0 352 36.4
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.0e-15 88.6 354 26.6
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.3e-15 88.2 381 35.2
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.7e-15 87.8 350 34.3
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 2.3e-15 87.4 357 34.7
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 3.0e-15 87.0 443 30.7
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 3.9e-15 86.7 207 45.4
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.3e-14 83.2 353 33.1
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.3e-14 83.2 358 34.4
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 5.6e-14 82.8 355 31.3
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 5.6e-14 82.8 269 32.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 7.3e-14 82.4 354 32.2
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 9.6e-14 82.0 407 33.7
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 8.1e-13 79.0 165 45.5
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.1e-12 78.6 199 46.7
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.1e-12 78.6 358 31.3
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.8e-12 77.8 362 30.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 6.9e-12 75.9 284 35.9
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 1.5e-11 74.7 345 30.1
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.6e-11 73.9 346 29.8
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.6e-11 73.9 355 33.0
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 2.6e-11 73.9 347 26.8
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.4e-11 73.6 353 28.0
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.4e-11 73.6 353 28.0
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 3.4e-11 73.6 356 35.4
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.4e-11 73.2 345 30.4
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.8e-11 72.8 346 32.1
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 5.8e-11 72.8 417 28.5
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.6e-11 72.4 299 29.1
GSVIVG01009951001 Vitis vinifera HOM05D004095 ORTHO05D003197 7.6e-11 72.4 133 58.6
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 9.9e-11 72.0 173 46.2
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 9.9e-11 72.0 353 32.6
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.3e-10 71.6 358 27.1
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-10 71.2 354 30.8
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 2.2e-10 70.9 408 31.4
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.9e-10 70.5 343 28.6
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 6.4e-10 69.3 235 38.7
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 8.4e-10 68.9 187 43.9
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.4e-10 68.9 345 29.6
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 1.1e-09 68.6 349 26.6
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-09 67.8 342 26.6
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.9e-09 67.8 353 28.0
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.4e-09 67.4 357 31.7
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.4e-09 67.4 246 30.1
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 4.2e-09 66.6 375 30.4
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 4.2e-09 66.6 355 30.7
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 2.1e-08 64.3 342 29.8
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.1e-08 64.3 250 32.0
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 2.1e-08 64.3 103 45.6
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 2.1e-08 64.3 204 43.6
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 2.7e-08 63.9 347 34.6
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.5e-08 63.5 349 32.1
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 3.5e-08 63.5 259 28.6
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.0e-08 62.8 360 32.5
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.0e-08 62.8 360 32.5
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.0e-07 62.0 370 31.4
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 1.0e-07 62.0 172 42.4
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.7e-07 61.2 353 27.8
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 1.7e-07 61.2 235 35.7
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.3e-07 60.8 251 27.9
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 2.3e-07 60.8 348 34.8
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 3.9e-07 60.1 203 39.4
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 5.1e-07 59.7 224 38.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 1.1e-06 58.5 86 38.4
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 1.5e-06 58.2 363 33.9
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.5e-06 58.2 252 25.4
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.3e-06 57.0 348 28.4
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 4.3e-06 56.6 361 33.0
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.3e-06 56.6 317 27.8
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 4.3e-06 56.6 183 42.1
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 5.6e-06 56.2 346 31.2
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 7.3e-06 55.8 273 28.9
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.3e-06 55.8 209 27.8


User provided reference genes

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