Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 2.8e-100 368.6 185 100.0
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 1.0e-49 200.7 127 73.2
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 3.2e-48 195.7 126 77.0
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.5e-45 186.8 148 61.5
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 2.5e-45 186.0 137 65.0
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 7.4e-45 184.5 142 63.4
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 9.7e-45 184.1 129 67.4
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 9.7e-45 184.1 126 68.3
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 2.2e-44 183.0 131 65.6
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.2e-44 183.0 111 77.5
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 8.2e-44 181.0 127 67.7
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 8.2e-44 181.0 153 60.1
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 1.1e-43 180.6 154 59.1
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 2.4e-43 179.5 131 62.6
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 2.4e-43 179.5 129 64.3
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 3.1e-43 179.1 127 66.1
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 4.1e-43 178.7 128 67.2
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 4.1e-43 178.7 128 67.2
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 5.3e-43 178.3 129 65.1
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 5.3e-43 178.3 124 66.9
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 6.9e-43 177.9 129 64.3
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 9.1e-43 177.6 159 57.2
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 9.1e-43 177.6 125 65.6
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.2e-42 177.2 140 60.7
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 1.5e-42 176.8 140 62.1
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.5e-42 176.8 140 62.1
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.5e-42 176.8 137 60.6
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 2.0e-42 176.4 131 64.1
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.6e-42 176.0 140 62.1
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 3.4e-42 175.6 129 64.3
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 4.5e-42 175.3 152 59.9
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 5.9e-42 174.9 159 56.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 5.9e-42 174.9 156 55.8
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 7.7e-42 174.5 161 57.1
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 7.7e-42 174.5 156 55.8
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.0e-41 174.1 107 74.8
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 1.0e-41 174.1 129 63.6
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 1.3e-41 173.7 132 59.8
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.7e-41 173.3 124 65.3
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 2.9e-41 172.6 127 63.8
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 3.8e-41 172.2 143 58.0
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 3.8e-41 172.2 132 65.2
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 3.8e-41 172.2 133 60.9
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 5.0e-41 171.8 127 63.8
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 6.5e-41 171.4 156 55.1
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 6.5e-41 171.4 128 60.9
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 6.5e-41 171.4 128 64.1
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 8.5e-41 171.0 129 60.5
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.4e-40 170.2 175 53.7
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.9e-40 169.9 124 64.5
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 1.9e-40 169.9 123 64.2
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 1.9e-40 169.9 147 58.5
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 2.5e-40 169.5 139 58.3
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 2.5e-40 169.5 123 65.0
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 3.2e-40 169.1 131 59.5
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 3.2e-40 169.1 163 54.0
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 4.2e-40 168.7 131 63.4
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 9.4e-40 167.5 129 58.9
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.2e-39 167.2 145 60.7
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 1.6e-39 166.8 135 60.7
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 3.0e-38 162.5 126 61.1
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 5.1e-38 161.8 131 60.3
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 6.7e-38 161.4 143 54.5
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 1.5e-37 160.2 145 55.9
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 1.5e-37 160.2 145 55.9
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 1.5e-37 160.2 145 55.9
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 2.0e-37 159.8 164 50.6
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 3.3e-37 159.1 126 57.9
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 4.4e-37 158.7 131 57.3
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 4.4e-37 158.7 131 57.3
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 4.4e-37 158.7 192 46.9
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 9.7e-37 157.5 127 59.1
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 1.3e-36 157.1 145 55.2
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 1.3e-36 157.1 145 55.2
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 2.8e-36 156.0 130 60.8
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 3.7e-36 155.6 151 53.0
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 8.2e-36 154.5 163 49.1
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.4e-35 153.7 125 59.2
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 2.4e-35 152.9 99 68.7
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 3.1e-35 152.5 156 50.6
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 5.3e-35 151.8 124 58.9
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 6.9e-35 151.4 83 84.3
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 6.9e-35 151.4 151 53.6
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 9.1e-35 151.0 125 56.8
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 1.5e-34 150.2 123 61.0
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 1.5e-34 150.2 148 49.3
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 2.0e-34 149.8 124 58.1
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 4.5e-34 148.7 124 57.3
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 5.9e-34 148.3 123 57.7
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 5.9e-34 148.3 166 47.6
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 7.7e-34 147.9 125 56.0
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 7.7e-34 147.9 168 46.4
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.1e-32 144.1 165 49.7
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 1.4e-32 143.7 168 45.2
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 5.5e-32 141.7 117 58.1
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 1.6e-31 140.2 116 60.3
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 7.9e-31 137.9 96 65.6
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.4e-30 137.1 127 57.5
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 1.4e-30 137.1 107 62.6
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 2.3e-30 136.3 101 66.3
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.9e-30 135.6 89 73.0
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 6.7e-30 134.8 99 61.6
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 3.1e-27 125.9 148 50.7
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 9.1e-27 124.4 89 62.9
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.5e-26 122.5 127 49.6
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 5.9e-26 121.7 166 41.0
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 1.3e-25 120.6 117 50.4
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 4.2e-24 115.5 93 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 1.8e-22 110.2 145 43.4
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 3.0e-22 109.4 133 46.6
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 2.6e-21 106.3 129 45.7
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 9.7e-21 104.4 101 52.5
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 1.7e-20 103.6 132 40.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 2.2e-20 103.2 111 50.5
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 1.1e-16 90.9 66 63.6
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 1.5e-16 90.5 119 39.5
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 4.4e-13 79.0 47 76.6
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 5.0e-09 65.5 78 46.2
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 2.1e-07 60.1 36 77.8
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 3.6e-07 59.3 40 67.5
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 3.6e-07 59.3 57 54.4


User provided reference genes

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