Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 5.5e-125 451.1 242 100.0
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 5.2e-30 135.6 252 42.1
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 6.7e-30 135.2 247 42.1
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 1.1e-29 134.4 245 41.2
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 4.4e-29 132.5 252 40.9
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.7e-28 130.6 241 41.5
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 4.8e-28 129.0 253 41.9
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.4e-27 127.5 251 39.8
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.8e-27 127.1 239 39.3
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 2.4e-27 126.7 255 37.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.2e-26 124.4 260 39.6
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 2.0e-26 123.6 252 38.5
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 2.0e-26 123.6 255 39.6
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 4.5e-26 122.5 263 36.1
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 7.7e-26 121.7 253 38.7
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 2.9e-25 119.8 244 38.5
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.8e-25 119.4 268 34.7
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 5.0e-25 119.0 241 39.4
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 5.0e-25 119.0 252 36.5
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 6.5e-25 118.6 263 36.5
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 6.5e-25 118.6 256 36.3
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 1.1e-24 117.9 248 39.5
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.5e-24 117.5 250 36.8
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 2.5e-24 116.7 252 37.7
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 4.2e-24 115.9 239 38.5
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.2e-24 115.9 256 39.1
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 4.2e-24 115.9 248 39.1
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 5.5e-24 115.5 242 39.3
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 5.5e-24 115.5 250 42.4
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 7.2e-24 115.2 245 38.8
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 9.4e-24 114.8 248 37.5
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.2e-23 114.4 241 37.8
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 1.2e-23 114.4 251 37.5
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 2.7e-23 113.2 269 36.4
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 2.7e-23 113.2 253 39.9
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 4.7e-23 112.5 256 35.5
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 6.1e-23 112.1 253 38.7
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 6.1e-23 112.1 288 35.8
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 6.1e-23 112.1 246 37.0
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 8.0e-23 111.7 238 37.8
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 8.0e-23 111.7 262 36.6
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 8.0e-23 111.7 223 37.7
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.0e-22 111.3 249 40.2
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 1.0e-22 111.3 249 38.2
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 1.4e-22 110.9 266 38.7
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.4e-22 110.9 245 37.1
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.8e-22 110.5 232 40.5
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.8e-22 110.5 261 36.8
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.8e-22 110.5 254 36.6
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 1.8e-22 110.5 278 36.0
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.3e-22 110.2 262 36.6
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 3.0e-22 109.8 264 33.3
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 4.0e-22 109.4 252 37.3
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.2e-21 107.8 253 38.7
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 1.5e-21 107.5 264 36.0
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.0e-21 107.1 261 36.4
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 2.0e-21 107.1 275 36.4
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 2.6e-21 106.7 244 36.5
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.6e-21 106.7 277 35.0
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.6e-21 106.7 242 39.7
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 2.6e-21 106.7 245 33.1
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 3.4e-21 106.3 264 36.7
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 3.4e-21 106.3 248 35.9
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 4.4e-21 105.9 249 34.9
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 5.7e-21 105.5 272 35.3
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 5.7e-21 105.5 253 36.0
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 7.5e-21 105.1 247 39.3
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 7.5e-21 105.1 250 35.6
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 7.5e-21 105.1 262 36.3
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 9.8e-21 104.8 269 33.5
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 9.8e-21 104.8 244 38.1
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 1.3e-20 104.4 266 35.0
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 1.3e-20 104.4 257 37.4
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.3e-20 104.4 254 37.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.7e-20 104.0 256 35.2
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 2.2e-20 103.6 264 35.6
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.2e-20 103.6 256 36.7
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 2.2e-20 103.6 259 36.7
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 2.8e-20 103.2 254 35.4
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 3.7e-20 102.8 263 33.8
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 3.7e-20 102.8 270 36.7
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 4.8e-20 102.4 299 35.8
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 4.8e-20 102.4 257 35.4
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 6.3e-20 102.1 286 33.6
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 6.3e-20 102.1 286 33.6
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 8.3e-20 101.7 263 33.8
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.4e-19 100.9 254 34.3
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 1.8e-19 100.5 266 35.3
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.8e-19 100.5 263 35.0
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 2.4e-19 100.1 243 37.0
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 3.1e-19 99.8 260 34.2
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 3.1e-19 99.8 265 35.5
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.1e-19 99.8 257 34.6
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 7.0e-19 98.6 258 36.4
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 7.0e-19 98.6 255 34.1
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 9.1e-19 98.2 280 37.1
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.6e-18 97.4 276 33.3
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 1.6e-18 97.4 264 34.8
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 1.6e-18 97.4 243 36.6
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.0e-18 97.1 265 33.6
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 4.5e-18 95.9 178 37.1
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 4.5e-18 95.9 259 34.7
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 5.9e-18 95.5 261 34.1
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 7.7e-18 95.1 264 36.0
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 7.7e-18 95.1 241 34.0
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.0e-17 94.7 253 32.8
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-17 94.4 261 34.9
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-17 94.4 261 34.9
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-17 94.4 261 34.9
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 2.2e-17 93.6 241 33.6
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 2.2e-17 93.6 246 36.2
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 2.9e-17 93.2 215 40.5
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 3.8e-17 92.8 281 33.5
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 5.0e-17 92.4 248 34.3
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 6.5e-17 92.0 279 33.0
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.5e-16 90.9 249 34.9
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.5e-16 90.9 256 34.8
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.5e-16 90.9 184 39.7
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.5e-16 90.1 250 34.8
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 5.5e-16 89.0 257 35.4
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 7.2e-16 88.6 253 34.4
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 9.4e-16 88.2 264 33.7
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.6e-15 87.4 294 29.9
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.7e-15 86.7 249 34.5
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 3.6e-15 86.3 224 33.0
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.3e-14 83.6 282 30.9
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 3.0e-14 83.2 267 33.7
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 6.8e-14 82.0 244 38.9
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 6.8e-14 82.0 278 29.5
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 8.8e-14 81.6 260 32.7
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 8.8e-14 81.6 260 32.7
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 8.8e-14 81.6 258 29.8
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.2e-13 81.3 270 29.3
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 1.2e-13 81.3 227 31.7
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 1.5e-13 80.9 261 36.8
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 1.5e-13 80.9 223 33.6
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.5e-13 80.9 258 32.2
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.5e-13 80.9 261 33.3
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 1.5e-13 80.9 252 34.9
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 3.4e-13 79.7 288 29.9
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 3.4e-13 79.7 241 32.4
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 4.4e-13 79.3 237 32.5
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 7.5e-13 78.6 258 32.9
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 9.8e-13 78.2 202 34.2
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.3e-12 77.8 257 32.7
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.7e-12 77.4 241 31.1
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 1.7e-12 77.4 255 30.2
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 1.7e-12 77.4 246 33.3
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 2.2e-12 77.0 207 36.7
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.1e-11 74.7 252 32.9
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-11 73.9 267 33.0
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.8e-11 73.9 267 33.0
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 5.4e-11 72.4 257 32.3
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 5.4e-11 72.4 257 32.3
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 5.4e-11 72.4 183 31.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 1.2e-10 71.2 104 43.3
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-10 71.2 240 32.1
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-10 71.2 198 34.8
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 1.6e-10 70.9 217 30.0
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 2.0e-10 70.5 192 33.9
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 2.0e-10 70.5 217 31.3
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 3.5e-10 69.7 140 33.6
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 4.5e-10 69.3 234 32.5
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 5.9e-10 68.9 94 45.7
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 7.7e-10 68.6 239 33.1
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 7.7e-10 68.6 230 32.6
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 2.3e-09 67.0 217 30.9
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.9e-09 66.6 237 35.4
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 2.9e-09 66.6 234 29.5
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 5.0e-09 65.9 238 31.9
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 5.0e-09 65.9 226 28.3
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 8.6e-09 65.1 202 29.7
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 2.5e-08 63.5 205 34.6
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 9.5e-08 61.6 166 33.7
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 3.6e-07 59.7 228 29.4
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.0e-06 58.2 238 27.7
CANSAT25G0622 Cannabis sativa HOM05D003173 ORTHO05D003546 2.3e-06 57.0 213 30.0
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.0e-06 56.6 225 25.8
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 4.0e-06 56.2 180 30.0
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 5.2e-06 55.8 221 25.8


User provided reference genes

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